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32 Open 42 Closed
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Issues list

Feature Request: Benchmarking Dataset Creation enhancement New feature or request
#72 opened Aug 14, 2024 by berntpopp
@berntpopp
2
Feature Request: Test Dataset Creation enhancement New feature or request
#71 opened Aug 14, 2024 by berntpopp minimum viable product (MVP)
@berntpopp
Feature Request: PEP8 Comments enhancement New feature or request
#69 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Normalize by Splice Junction Count enhancement New feature or request
#68 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Add Coverage to Summary Report enhancement New feature or request
#65 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Check Coverage on Antibiotic Resistance Genes (e.g., AmpR) enhancement New feature or request
#64 opened Aug 14, 2024 by berntpopp
@berntpopp
Bug: MD5sum File Duplicates bug Something isn't working
#63 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature Request: Add Scatter Plot on Top of Respective Boxplot enhancement New feature or request
#61 opened Aug 14, 2024 by berntpopp
@berntpopp
Feature request: Integrate CoverageOutsideINSERT and MismatchesNearINSERT in Summary Report enhancement New feature or request
#58 opened Aug 14, 2024 by berntpopp
5 tasks
@berntpopp
Feature request: Add Favicon to HTML Output enhancement New feature or request
#53 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Additional Plots for Summary Report enhancement New feature or request
#51 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Correct cutoffs for exon count/CDS length (investigate methods) enhancement New feature or request
#50 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Generate IGV sessions with references and BAMs enhancement New feature or request
#49 opened Aug 13, 2024 by berntpopp
@berntpopp
Feature request: Explore machine learning for plasmid/human classification enhancement New feature or request
#44 opened Aug 13, 2024 by berntpopp Manuscript
@berntpopp
feat: Reuse spliced alignment information based on md5sum enhancement New feature or request
#43 opened Aug 13, 2024 by berntpopp
@berntpopp
1
feat: Reuse indices for plasmids based on md5sum enhancement New feature or request
#39 opened Aug 12, 2024 by berntpopp
@berntpopp
docs: Better describe the tool's logic, also visually with graphs enhancement New feature or request
#35 opened Aug 7, 2024 by berntpopp
1 of 3 tasks
minimum viable product (MVP)
@berntpopp
docs: Provide detailed documentation with examples enhancement New feature or request
#34 opened Aug 7, 2024 by berntpopp
3 tasks
minimum viable product (MVP)
@berntpopp
feat: Add support for containerization (Docker) enhancement New feature or request
#33 opened Aug 7, 2024 by berntpopp
@berntpopp
feat: Implement a dry-run mode enhancement New feature or request
#32 opened Aug 7, 2024 by berntpopp
@berntpopp
1
feat: Automated versioning with each commit enhancement New feature or request
#31 opened Aug 7, 2024 by berntpopp
@berntpopp
feat: Add a progress bar for long-running operations enhancement New feature or request
#29 opened Aug 7, 2024 by berntpopp
@berntpopp
feat: Implement shifted reference to fix MAPQ0 due to identical sequence parts enhancement New feature or request
#28 opened Aug 7, 2024 by berntpopp
@berntpopp
feat: Allow customization of the output report template enhancement New feature or request
#26 opened Aug 7, 2024 by berntpopp
@berntpopp
feat: Provide an interactive mode for easier interaction enhancement New feature or request
#25 opened Aug 7, 2024 by berntpopp
@berntpopp
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