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feat: Implement shifted reference to fix MAPQ0 due to identical sequence parts #28

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berntpopp opened this issue Aug 7, 2024 · 0 comments

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berntpopp commented Aug 7, 2024

Description:
Develop a solution to handle MAPQ0 issues caused by identical sequence parts in the shifted reference, improving alignment accuracy.

Tasks:

Analyze the cause of MAPQ0 issues with identical sequence parts.
Implement a strategy to differentiate identical sequences in the shifted reference.
Validate the solution to ensure it resolves MAPQ0 issues.

berntpopp added the enhancement label

berntpopp self-assigned this

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