Skip to content

Issues: INCATools/biosample-analysis

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

25 Open 30 Closed
25 Open 30 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

API methods to generate additional summary rows for Biosample table
#82 opened Jan 19, 2022 by realmarcin
provide NER output from SQLlite/basex tables
#81 opened Dec 15, 2021 by realmarcin
generate parquet file from SQLite/basex data
#80 opened Dec 15, 2021 by realmarcin
add Bioproject ids to Biosample records
#79 opened Dec 3, 2021 by realmarcin
decide on release artifacts
#78 opened Aug 26, 2021 by wdduncan
3
Can't find issue for reconciling curated NMDC ENVO subsets with INSDC ustilized terms
#66 opened Jul 6, 2021 by turbomam
2
use consistent case for ontology names
#64 opened Jul 6, 2021 by turbomam
repairing env_sample and mixs triad within biosample-analysis
#63 opened Jul 6, 2021 by turbomam
.gitignore additions in master
#59 opened Jun 18, 2021 by turbomam
2
expected fields errors when reading full biosample tsv with pandas
#52 opened May 27, 2021 by realmarcin
1
add additional biosample identifiers as columns
#51 opened May 19, 2021 by realmarcin
1
Build classifier using biosample training data
#38 opened Mar 8, 2021 by realmarcin
experimental factor
#35 opened Nov 11, 2020 by cmungall
Normalize unit representations
#32 opened Oct 7, 2020 by wdduncan
run NER/CR over all textual metadata fields
#31 opened Oct 5, 2020 by cmungall
@hrshdhgd
1
Expand TSV to include closures of ontology classes (primarily EnvO)
#30 opened Oct 2, 2020 by cmungall
normalize missing values
#26 opened Sep 29, 2020 by cmungall
2
normalize ENVO terms
#25 opened Sep 29, 2020 by cmungall
@hrshdhgd
11
normalize package names
#24 opened Sep 29, 2020 by cmungall
@wdduncan
4
explore TPOT package for more automated transform, feature and model selection
#20 opened Sep 25, 2020 by realmarcin
identify key set of quantitative fields to predict environment terms
#17 opened Sep 23, 2020 by realmarcin
Validate harmonized attributes using MIxS patterns
#8 opened Sep 17, 2020 by cmungall
@wdduncan
Translate to KGX edges format and use embiggen to embed and perform link prediction
#5 opened Sep 1, 2020 by cmungall
@wdduncan
Are all fields at the Study level inherited by Samples?
#3 opened Sep 1, 2020 by realmarcin
@wdduncan
fetch study metadata
#1 opened Aug 12, 2020 by cmungall
@hrshdhgd
6
ProTip! Adding no:label will show everything without a label.