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is a pipeline prototype going all the way from the original TSV (or some subset), to a numeric matrix passed to DecisionTree and viz. Lots more can be added, but this pipeline could already be plugged into TPOT.
The text was updated successfully, but these errors were encountered:
... this is for once we have a usable numeric matrix for analysis/ML.
The TPOT package is actually an amazing feat I think, wish they had made it sooner!
https://github.com/EpistasisLab/tpot
The notebook I committed:
https://github.com/realmarcin/biosample-analysis/blob/master/notebooks/first_analysis_notebook.ipynb
is a pipeline prototype going all the way from the original TSV (or some subset), to a numeric matrix passed to DecisionTree and viz. Lots more can be added, but this pipeline could already be plugged into TPOT.
The text was updated successfully, but these errors were encountered: