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provide NER output from SQLlite/basex tables #81

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realmarcin opened this issue Dec 15, 2021 · 0 comments
Open

provide NER output from SQLlite/basex tables #81

realmarcin opened this issue Dec 15, 2021 · 0 comments

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@realmarcin
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NER methods were run on an earlier version of the Biosample data, specifically for the Title and Description fields. This process used a simple TSV file with these fields source from the Biosample table:

biosample id
title
description

For the next iteration, it should be possible to have an additional piece of code as part of the NER pipeline to execute a basex query and output the results in the TSV format above for NER input.

@hrshdhgd @turbomam

@realmarcin realmarcin changed the title provide NER input from basex tables provide NER input from SQLlite/basex tables Dec 15, 2021
@realmarcin realmarcin changed the title provide NER input from SQLlite/basex tables provide NER output from SQLlite/basex tables Jan 19, 2022
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