Snakemake pipeline for simulating shotgun metagenomic samples
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Updated
Nov 21, 2024 - Python
Snakemake pipeline for simulating shotgun metagenomic samples
Quantitative metagenomic alignment and taxonomic exact-matching
This repository contains scripts to run 9 different shotgun metagenomics profiling software on a rat tissue dataset as well as scripts for their downstream analysis (import into R, alpha/beta diversity, & differential abundant analysis).
This repository contains the code for ShotgunMG, a Nextflow bioinformatic pipeline for high-resolution metagenomics
Data Carpentry workshop organised at Utrecht University Medical Center on December 8-9, 2022.
Here we discuss strategies and workflows to analyse metagenomics datasets
Comparing 3 different metagenomics approaches with ONT's long read sequencing method
🦇🧫📊Supplementary materials for study on bat gut shotgun metagenomics
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