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metagenlab

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  1. mummer2circos mummer2circos Public

    Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

    Python 100 24

  2. zDB zDB Public

    zDB: comparative bacterial genomics made easy

    HTML 31 4

  3. MeSS MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    Python 19 2

  4. assembly_finder assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    Python 12

  5. locus2genoplotr locus2genoplotr Public

    Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram

    Python 10 1

  6. zAMP zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    R 8 5

Repositories

Showing 10 of 29 repositories
  • benchmark-MeSS-CAMISIM Public

    Nextflow pipeline to benchmark MeSS and CAMISIM

    metagenlab/benchmark-MeSS-CAMISIM’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Dec 16, 2024
  • MeSS-figures Public

    Supplementary figures and scripts for the MeSS paper

    metagenlab/MeSS-figures’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 16, 2024
  • zAMPExplorer Public

    zAMPExplorer

    metagenlab/zAMPExplorer’s past year of commit activity
    R 0 1 0 1 Updated Dec 16, 2024
  • metagenlab.r-universe.dev Public
    metagenlab/metagenlab.r-universe.dev’s past year of commit activity
    0 0 0 0 Updated Dec 15, 2024
  • zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    metagenlab/zAMP’s past year of commit activity
    R 8 MIT 5 7 0 Updated Dec 9, 2024
  • zDB Public

    zDB: comparative bacterial genomics made easy

    metagenlab/zDB’s past year of commit activity
    HTML 31 MIT 4 2 1 Updated Dec 4, 2024
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    metagenlab/configs’s past year of commit activity
    Nextflow 0 MIT 278 0 0 Updated Nov 29, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    metagenlab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,323 0 0 Updated Nov 29, 2024
  • diag_pipelines Public

    Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.

    metagenlab/diag_pipelines’s past year of commit activity
    Python 6 9 5 1 Updated Nov 26, 2024
  • assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    metagenlab/assembly_finder’s past year of commit activity
    Python 12 MIT 0 0 0 Updated Nov 21, 2024
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