LLM-based ontological extraction tools, including SPIRES
Linked Open Data Modeling Language
Schema and generated objects for biolink data model and upper ontology
Simple Standard for Sharing Ontology Mappings
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions…
Python toolkit for SSSOM mapping format
Data transformation framework for LinkML data models
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
SQL and SQLite builds of OWL ontologies
Automated assistance for the schema development lifecycle
Link Modeling Language (LinkML) model
A knowledge extraction tool that uses a large language model to extract semantic information from text
Runtime support for linkml generated models
National Microbiome Data Collaborative (NMDC) unified data model
wrapper for multiple linkml storage engines
CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
Tools for working with KGCL
Data ingest application for Monarch Initiative knowledge graph using Koza
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