Skip to content

Issues: microbiomedata/nmdc-schema

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

367 Open 957 Closed
367 Open 957 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Document nmdc-schema developer quick start (not containerized)
#2303 opened Dec 10, 2024 by eecavanna
@eecavanna
remove enums that aren't used by any slots according to assets/schema_pattern_linting.txt
#2298 opened Dec 5, 2024 by turbomam
@turbomam
1
remove slots that aren't used by any class, according to assets/schema_pattern_linting.txt
#2297 opened Dec 5, 2024 by turbomam
@turbomam
1
update mappings documentation pages for greater signal:noise
#2289 opened Dec 4, 2024 by turbomam
@sujaypatil96
1
Make a quick reference that maps typecode to schema class name documentation Improvements or additions to documentation X SMALL Less than 8 hours, less than 1 day
#2285 opened Dec 4, 2024 by eecavanna
@eecavanna
7
Derive structured patterns for referrer at schema compilation time backlog Issue not assigned to a sprint or not completed during a sprint. Needs to be reprioritized. cleanup
#2280 opened Nov 27, 2024 by eecavanna
1
Create PR template for the nmdc-schema repository documentation Improvements or additions to documentation X SMALL Less than 8 hours, less than 1 day
#2279 opened Nov 27, 2024 by eecavanna
@eecavanna
1
Expand description of tiss_cult_growth_med slot
#2267 opened Nov 13, 2024 by pkalita-lbl
determine if and how invalid example files should be used to illustrate deprecation of classes
#2260 opened Nov 12, 2024 by turbomam
Find replacements for GENEPIO and OMIT mappings if possible and/or define prefixes
#2258 opened Nov 12, 2024 by turbomam
1
Broken link: w3id link to MIxS terms is broken broken-link bug Something isn't working
#2255 opened Nov 12, 2024 by eecavanna
@turbomam
Docs: Mermaid diagram of development environment says "Unsupported markdown" in some places backlog Issue not assigned to a sprint or not completed during a sprint. Needs to be reprioritized. bug Something isn't working diagrams documentation Improvements or additions to documentation X SMALL Less than 8 hours, less than 1 day
#2247 opened Nov 3, 2024 by eecavanna
@eecavanna
Add inter-class diagram generated by refscan to schema documentation diagrams documentation Improvements or additions to documentation enhancement New feature or request gen-doc GH actions X SMALL Less than 8 hours, less than 1 day
#2242 opened Nov 1, 2024 by eecavanna
2 tasks done
1
@eecavanna
1
make slot usage range match structured syntax patterns
#2238 opened Oct 31, 2024 by aclum
@sierra-moxon @turbomam
5
Edit # headers in src/docs/v10-vs-v11-retrospective.md for better right hand index in GH Pages
#2233 opened Oct 30, 2024 by turbomam
@turbomam
Sentence in docs starts with lowercase letter and lacks trailing period bug Something isn't working documentation Improvements or additions to documentation X SMALL Less than 8 hours, less than 1 day
#2232 opened Oct 26, 2024 by eecavanna
2 tasks
@sujaypatil96
1
groom dependencies
#2217 opened Oct 16, 2024 by turbomam
@turbomam
5
do a poetry update?
#2216 opened Oct 16, 2024 by turbomam
@turbomam
Migrations: Revisit requirement of specifying schema versions in migrators
#2205 opened Oct 9, 2024 by eecavanna
GitHub Actions test_pages_build.yaml workflow fails on cross-fork PRs bug Something isn't working documentation Improvements or additions to documentation
#2199 opened Oct 8, 2024 by eecavanna
@sujaypatil96
2
GHA uses Python 3.9 for building docs, but Python 3.10 for building package cleanup dependencies Pull requests that update a dependency file devops GH actions X SMALL Less than 8 hours, less than 1 day
#2191 opened Sep 27, 2024 by eecavanna
2
post berkeley-schema-fy24 merge issue: review FileTypeEnum composition and correlation with other DataObject slots/relationships FileTypeEnum composition or usage of FileTypeEnum, which fills a DataObject's data_object_type slot
#2186 opened Sep 24, 2024 by turbomam
@turbomam
2
alternative to hard-coded ___indentation in environmental context value sets: is_a relations between permissible values
#2184 opened Sep 18, 2024 by turbomam
novaseq x updates
#2183 opened Sep 16, 2024 by aclum
berkeley-schema-fy24: make squeaky-clean all output begins with error message about missing file local/gold-study-ids.yaml backlog Issue not assigned to a sprint or not completed during a sprint. Needs to be reprioritized. bug Something isn't working cleanup unfinished wasn't completed during sprint, should be reprioritized and/or broken down to smaller issues X SMALL Less than 8 hours, less than 1 day
#2177 opened Sep 6, 2024 by eecavanna
@turbomam
10
ProTip! Follow long discussions with comments:>50.