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remove slots that aren't used by any class, according to assets/schema_pattern_linting.txt #2297

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turbomam opened this issue Dec 5, 2024 · 1 comment
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@turbomam
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turbomam commented Dec 5, 2024

best practice says that a migrator should be written

if we decide to remove some that come from MIxS, then we would (currently) edit assets/import_mixs_slots_regardless.tsv

  • biogas_retention_time
  • biogas_temperature
  • chimera_check, MIXS:0000052
  • completion_date
  • date_created
  • definition
  • ecosystem_path_id
  • emsl_store_temp
  • etl_software_version
  • has_boolean_value
  • input_volume
  • insdc_analysis_identifiers
  • insdc_secondary_sample_identifiers
  • insdc_sra_ena_study_identifiers
  • jgi_portal_analysis_project_identifiers
  • material_component_separation
  • mgnify_analysis_identifiers
  • modifier_substance
  • nucl_acid_ext, MIXS:0000037
  • object
  • ontology_class_set
  • pool_dna_extracts, MIXS:0000325
  • predicate
  • relations
  • samp_vol_we_dna_ext, MIXS:0000111
  • sample_collection_day
  • sample_collection_hour
  • sample_collection_minute
  • sample_collection_month
  • sample_collection_year
  • seq_meth, MIXS:0000050
  • seq_quality_check, MIXS:0000051
  • soil_annual_season_temp
  • value
@turbomam turbomam self-assigned this Dec 5, 2024
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turbomam commented Dec 5, 2024

slots with sub-slots

  • analysis_identifiers
  • assembly_identifiers
  • biosample_identifiers
  • concentration
  • emsl_identifiers
  • gff_coordinate
  • gnps_identifiers
  • gold_identifiers
  • gold_path_field
  • igsn_identifiers
  • insdc_identifiers
  • jgi_portal_identifiers
  • metagenome_assembly_parameter
  • mgnify_identifiers
  • neon_identifiers
  • object_set
  • omics_processing_identifiers
  • read_qc_analysis_statistic
  • study_identifiers

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