Outlier Detection Thresholding
GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) R-Shiny implementation.
A simple pipeline for bacterial assembly and quality control
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Python package to calculate various sample contamination metrics.
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
Generate Coverage, Quality and Contamination metrics for Sequence data.
In this repository I backup the pipelines I write for the project I am involved
luftdaten script for raspberry with enviro+
Detect and quantify plasmid DNA contamination in sequencing data
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