Skip to content

Issues: open2c/cooltools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

60 Open 248 Closed
60 Open 248 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

IndexError: index 0 is out of bounds for axis 0 with size 0
#542 opened Nov 8, 2024 by shRDJr
Error when running cooltools random-sample
#541 opened Oct 23, 2024 by GMFranceschini
4
Can not install cooltools
#538 opened Sep 15, 2024 by xiasijian
1
Control/Observed whole genome.
#537 opened Sep 6, 2024 by rkash
1
Performance of obs/exp pileups is significantly lower than of obs pileups with nproc > 1
#536 opened Aug 21, 2024 by dmitrymyl
update cooltools in conda
#526 opened Jul 5, 2024 by fys666
cooltools virtual4c
#519 opened May 22, 2024 by BenxiaHu
4
first diagonal NaNs for smoothed expected_cis
#509 opened Mar 11, 2024 by gfudenberg
allow alternate reductions for aggregation across diagonals enhancement
#507 opened Mar 4, 2024 by gfudenberg
synchronize CLI and API defaults for get_expected_cis smoothing & aggregation enhancement
#506 opened Mar 4, 2024 by gfudenberg
migrate log-smoothing to mini-library enhancement
#505 opened Mar 4, 2024 by gfudenberg
2
insulation & edge effects: consider masking? question
#503 opened Feb 27, 2024 by gfudenberg
snippers: order of "select" and "snip" matters, but should it
#502 opened Feb 18, 2024 by sergpolly
pileup around centromeres
#491 opened Jan 28, 2024 by ratheraarif
16
Needs a "cool" logo
#490 opened Jan 28, 2024 by thomas-reimonn
systematic treatment of floating point warnings from numpy
#482 opened Jan 18, 2024 by sergpolly
Unable to install with poetry
#467 opened Nov 6, 2023 by thomas-reimonn
5
Issue with cooltools.api.snipping.pileup() compatibility with bioframe/core/construction.py", line 150 question
#462 opened Oct 6, 2023 by haleybianchi
5
Downsampling and cis counts enhancement
#458 opened Aug 7, 2023 by ddepierre
2
snippers use different arithmetics than cooler for determining bins from coordinates bug
#446 opened May 31, 2023 by Phlya
@agalitsyna
eigs_cis: input checking enhancement
#428 opened Mar 30, 2023 by gfudenberg
2
pileup: bed vs. bedpe inference enhancement
#427 opened Mar 30, 2023 by gfudenberg
2
cooltools stats CLI enhancement
#415 opened Feb 2, 2023 by agalitsyna
1
cooltools eigs-cis CLI output enhancement
#394 opened Oct 10, 2022 by gfudenberg
1
fetch-chromsizes enhancement
#393 opened Oct 10, 2022 by gfudenberg
1
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.