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1. cooler cooler Public

   A cool place to store your Hi-C

   Python 208 50

2. cooltools cooltools Public

   The tools for your .cool's

   Jupyter Notebook 140 51

3. pairtools pairtools Public

   Extract 3D contacts (.pairs) from sequencing alignments

   Python 104 32

4. bioframe bioframe Public

   Genomic interval operations on Pandas DataFrames

   Python 175 28

5. distiller-nf distiller-nf Public

   A modular Hi-C mapping pipeline

   Groovy 87 24

6. polychrom polychrom Public

   Chromosome polymer simulations and in silico capture experiments

   Python 47 16