Corrections to Chapter 12

12_ultima_continued/Project.toml

@@ -1,19 +1,16 @@
-name = "VolterraExp"
-uuid = "0faabb05-91c8-4f15-b0c7-da5206200d23"
-authors = ["jmartensen <[email protected]>"]
-version = "0.1.0"
-
 [deps]
 DataDrivenDiffEq = "2445eb08-9709-466a-b3fc-47e12bd697a2"
+DataDrivenSparse = "5b588203-7d8b-4fab-a537-c31a7f73f46b"
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DiffEqFlux = "aae7a2af-3d4f-5e19-a356-7da93b79d9d0"
 DiffEqSensitivity = "41bf760c-e81c-5289-8e54-58b1f1f8abe2"
 DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
 Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c"
-JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-Juno = "e5e0dc1b-0480-54bc-9374-aad01c23163d"
-Lasso = "b4fcebef-c861-5a0f-a7e2-ba9dc32b180a"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
 Optim = "429524aa-4258-5aef-a3af-852621145aeb"
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
-Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
+RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
+StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
+StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd"

docs/libs/anchor-sections-1.1.0/anchor-sections-hash.css

@@ -0,0 +1,2 @@
+/* Styles for section anchors */
+a.anchor-section::before {content: '#';font-size: 80%;}

docs/libs/anchor-sections-1.1.0/anchor-sections.css

@@ -0,0 +1,4 @@
+/* Styles for section anchors */
+a.anchor-section {margin-left: 10px; visibility: hidden; color: inherit;}
+.hasAnchor:hover a.anchor-section {visibility: visible;}
+ul > li > .anchor-section {display: none;}

docs/libs/anchor-sections-1.1.0/anchor-sections.js

@@ -0,0 +1,11 @@
+document.addEventListener('DOMContentLoaded', function () {
+  // If section divs is used, we need to put the anchor in the child header
+  const headers = document.querySelectorAll("div.hasAnchor.section[class*='level'] > :first-child")
+
+  headers.forEach(function (x) {
+    // Add to the header node
+    if (!x.classList.contains('hasAnchor')) x.classList.add('hasAnchor')
+    // Remove from the section or div created by Pandoc
+    x.parentElement.classList.remove('hasAnchor')
+  })
+})

docs/libs/gitbook-2.6.7/css/plugin-bookdown.css

@@ -97,3 +97,9 @@ div.proof>*:last-child:after {
 .header-section-number {
   padding-right: .5em;
 }
+#header .multi-author {
+  margin: 0.5em 0 -0.5em 0;
+}
+#header .date {
+  margin-top: 1.5em;
+}

docs/libs/gitbook-2.6.7/css/plugin-fontsettings.css

@@ -44,13 +44,24 @@
   line-height: 30px;
   font-size: 1em;
 }
+
+/* sidebar transition background */
+div.book.color-theme-1 {
+  background: #f3eacb;
+}
 .book.color-theme-1 .book-body {
   color: #704214;
   background: #f3eacb;
 }
 .book.color-theme-1 .book-body .page-wrapper .page-inner section {
   background: #f3eacb;
 }
+
+/* sidebar transition background */
+div.book.color-theme-2 {
+  background: #1c1f2b;
+}
+
 .book.color-theme-2 .book-body {
   color: #bdcadb;
   background: #1c1f2b;

docs/libs/gitbook-2.6.7/js/plugin-clipboard.js

@@ -9,7 +9,9 @@ gitbook.require(["gitbook", "jQuery"], function(gitbook, $) {
 
     // the page.change event is thrown twice: before and after the page changes
     if (clipboard) {
-      // clipboard is already defined
+      // clipboard is already defined but we are on the same page
+      if (clipboard._prevPage === window.location.pathname) return;
+      // clipboard is already defined and url path change
       // we can deduct that we are before page changes
       clipboard.destroy(); // destroy the previous events listeners
       clipboard = undefined; // reset the clipboard object
@@ -24,6 +26,8 @@ gitbook.require(["gitbook", "jQuery"], function(gitbook, $) {
       }
     });
 
+    clipboard._prevPage = window.location.pathname
+
   });
 
 });

docs/libs/gitbook-2.6.7/js/plugin-search.js

@@ -1,9 +1,24 @@
 gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
     var index = null;
+    var fuse = null;
+    var _search = {engine: 'lunr', opts: {}};
     var $searchInput, $searchLabel, $searchForm;
     var $highlighted = [], hi, hiOpts = { className: 'search-highlight' };
     var collapse = false, toc_visible = [];
 
+    function init(config) {
+        // Instantiate search settings
+        _search = gitbook.storage.get("search", {
+            engine: config.search.engine || 'lunr',
+            opts: config.search.options || {},
+        });
+    };
+
+    // Save current search settings
+    function saveSearchSettings() {
+        gitbook.storage.set("search", _search);
+    }
+
     // Use a specific index
     function loadIndex(data) {
         // [Yihui] In bookdown, I use a character matrix to store the chapter
@@ -14,18 +29,36 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
         // lunr cannot handle non-English text very well, e.g. the default
         // tokenizer cannot deal with Chinese text, so we may want to replace
         // lunr with a dumb simple text matching approach.
-        index = lunr(function () {
-          this.ref('url');
-          this.field('title', { boost: 10 });
-          this.field('body');
-        });
-        data.map(function(item) {
-          index.add({
-            url: item[0],
-            title: item[1],
-            body: item[2]
+        if (_search.engine === 'lunr') {
+          index = lunr(function () {
+            this.ref('url');
+            this.field('title', { boost: 10 });
+            this.field('body');
           });
-        });
+          data.map(function(item) {
+            index.add({
+              url: item[0],
+              title: item[1],
+              body: item[2]
+            });
+          });
+          return;
+        }
+        fuse = new Fuse(data.map((_data => {
+            return {
+                url: _data[0],
+                title: _data[1],
+                body: _data[2]
+            };
+        })), Object.assign(
+            {
+                includeScore: true,
+                threshold: 0.1,
+                ignoreLocation: true,
+                keys: ["title", "body"]
+            },
+            _search.opts
+        ));
     }
 
     // Fetch the search index
@@ -36,20 +69,33 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
 
     // Search for a term and return results
     function search(q) {
-        if (!index) return;
-
-        var results = _.chain(index.search(q))
-        .map(function(result) {
-            var parts = result.ref.split("#");
-            return {
-                path: parts[0],
-                hash: parts[1]
-            };
-        })
-        .value();
+        let results = [];
+        switch (_search.engine) {
+            case 'fuse':
+                if (!fuse) return;
+                results = fuse.search(q).map(function(result) {
+                    var parts = result.item.url.split('#');
+                    return {
+                        path: parts[0],
+                        hash: parts[1]
+                    };
+                });
+                break;
+            case 'lunr':
+            default:
+                if (!index) return;
+                results = _.chain(index.search(q)).map(function(result) {
+                    var parts = result.ref.split("#");
+                    return {
+                        path: parts[0],
+                        hash: parts[1]
+                    };
+                })
+                .value();
+        }
 
         // [Yihui] Highlight the search keyword on current page
-        $highlighted = results.length === 0 ? [] : $('.page-inner')
+        $highlighted = $('.page-inner')
           .unhighlight(hiOpts).highlight(q, hiOpts).find('span.search-highlight');
         scrollToHighlighted(0);
 
@@ -172,6 +218,7 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
     gitbook.events.bind("start", function(e, config) {
         // [Yihui] disable search
         if (config.search === false) return;
+        init(config);
         collapse = !config.toc || config.toc.collapse === 'section' ||
           config.toc.collapse === 'subsection';
 

docs/libs/gitbook-2.6.7/js/plugin-sharing.js

@@ -57,10 +57,21 @@ gitbook.require(["gitbook", "lodash", "jQuery"], function(gitbook, _, $) {
                 e.preventDefault();
                 window.open("http://vkontakte.ru/share.php?url="+encodeURIComponent(location.href));
             }
-        }
+        },
+        'whatsapp': {
+            'label': 'Whatsapp',
+            'icon': 'fa fa-whatsapp',
+            'onClick': function(e) {
+                e.preventDefault();
+                var url = encodeURIComponent(location.href);
+                window.open((isMobile() ? "whatsapp://send" : "https://web.whatsapp.com/send") + "?text=" + url);
+            }
+        },
     };
 
-
+    function isMobile() {
+      return !!navigator.maxTouchPoints;
+    }
 
     gitbook.events.bind("start", function(e, config) {
         var opts = config.sharing;