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Achievements

Achievement: YOLOAchievement: Pull Sharkx2Achievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: Pull Sharkx2Achievement: QuickdrawAchievement: StarstruckAchievement: Arctic Code Vault Contributor

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spribitzer/README.md

🔬 Bioinformatics and Software Engineer | 🧬 Quantum Computing/BioPhysics PhD | 💻 Scientific Software Architect

🌟 Welcome to my GitHub! I'm passionate about building efficient and scalable software solutions at the intersection of science, engineering, and innovation.

🛠️ Skills and Expertise

💻 Programming Languages

Python R Bash Perl MATLAB C++ LaTeX Markdown Julia YAML

⚙️ Workflow Management

Snakemake Nextflow

🧬 Bioinformatics Tools

TensorFlow Keras

  • GATK, STAR, samtools, bedtools, deeptools, salmon, fastQC, kalisto, featureCounts, htseq-count, flowJo, fastp, picard, mixcr, cellranger, spaceranger, and many more.
  • Seurat, limma, edgeR, DESeq2, Monocle, Scanpy, ...

🌐 Web Development

Django Dash Shiny React Node.js FastAPI Flutter

🗄️ DevOps and CI/CD

GitHub Actions GitHub Bitbucket Nginx

🗄️ Databases

SQL MongoDB

☁️ Cloud Computing

AWS Amazon S3

🐳 Containerization

Docker Singularity

💾 Storage Solutions
Amazon S3

  • Networked drive management, including CIFS and WebDAV configurations.

🤝 Let's Collaborate

I’m open to collaborating on exciting projects in:
🔬 Bioinformatics | 🛠️ Workflow Automation | ☁️ HPC and Cloud Computing | 🌐 Web Application Development

Pinned Loading

  1. StollLab/EasySpin StollLab/EasySpin Public

    MATLAB toolbox for Electron Paramagnetic Resonance (EPR) spectroscopy

    MATLAB 49 26

  2. StollLab/dive StollLab/dive Public

    Probabilistic analysis of DEER spectroscopy data in Python

    Python 4 2