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Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

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shodgkins/kingfisher-download_edits

 
 

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Kingfisher is a fast and flexible program for procurement of sequence files (and their annotations) from public data sources, including the European Nucleotide Archive (ENA), NCBI SRA, Amazon AWS and Google Cloud. It's input is one or more "Run" accessions e.g. DRR001970, or a BioProject accessions e.g. PRJNA621514 or SRP260223.

For more documentation, see https://wwood.github.io/kingfisher-download/

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Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

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  • Python 98.9%
  • Shell 1.1%