Merge pull request #48 from phenoscape/shalsh-patch

Return with error in case of invalid command

src/main/scala/org/phenoscape/owl/build/Command.scala

@@ -19,14 +19,15 @@ object Command extends App {
     case "convert-nexml"                => ConvertNeXML.main(commandArgs)
     case "assert-negation-hierarchy"    => NegationHierarchyAsserter.main(commandArgs)
     case "output-evolutionary-profiles" => EvolutionaryProfiles.main(commandArgs)
+
     case "homology-table-to-owl"        =>
       val homologyArgs = commandArgs.drop(1)
       commandArgs(0).toLowerCase match {
         case "rea"          => HomologyTableWithTaxa.main(homologyArgs)
         case "ava"          => HomologyTableToOWLVAHM.main(homologyArgs)
         case "rolification" => HomologyTableDemoRolification.main(homologyArgs)
       }
-    case _                              => println(
+    case _                              => { println(
       """
 Valid commands are:
 
@@ -46,6 +47,9 @@ homology-table-to-owl
 
 Consult the source code for required parameters.
       """)
+
+      System.exit(1)
+    }
   }
 
 }