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Update taxa_with_state.rq #7

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Nov 20, 2019
Merged

Update taxa_with_state.rq #7

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a6ff5bc
Update taxa_with_state.rq
balhoff Nov 26, 2018
3c7f51a
Update taxa_with_state.rq
balhoff Nov 26, 2018
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14 changes: 11 additions & 3 deletions taxa_with_state.rq
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Original file line number Diff line number Diff line change
Expand Up @@ -8,21 +8,29 @@ PREFIX dc: <http://purl.org/dc/elements/1.1/>
PREFIX StandardState: <http://purl.obolibrary.org/obo/CDAO_0000045>
PREFIX bd: <http://www.bigdata.com/rdf/search#>
# Replace the prefix value with the state URI of interest
PREFIX characterstate: <http://purl.org/phenoscape/uuid/528ce2b2-1710-4ea4-87da-ee7ec4a9bc57>
#PREFIX characterstate: <http://purl.org/phenoscape/uuid/528ce2b2-1710-4ea4-87da-ee7ec4a9bc57>
PREFIX has_state: <http://purl.obolibrary.org/obo/CDAO_0000184>
PREFIX has_tu: <http://purl.obolibrary.org/obo/CDAO_0000208>
PREFIX belongs_to_tu: <http://purl.obolibrary.org/obo/CDAO_0000191>
PREFIX has_external_reference: <http://purl.obolibrary.org/obo/CDAO_0000164>
PREFIX hint: <http://www.bigdata.com/queryHints#>

SELECT DISTINCT ?taxon ?taxon_label ?matrix_label
FROM <http://kb.phenoscape.org/>
WHERE
{
?cell has_state: characterstate: .
?cell has_state: ?character_state .
?cell belongs_to_tu: ?otu .
?otu has_external_reference: ?taxon .
?taxon rdfs:label ?taxon_label .
?matrix has_tu: ?otu .
?matrix rdfs:label ?matrix_label .
{
# This subselect grabs a random character state. Replace
# ?character_state in the above with a specific URI if desired.
SELECT ?character_state WHERE {
?character_state rdf:type StandardState:
} LIMIT 1
}
hint:Prior hint:runFirst true .
}