Merge pull request #10 from phac-nml/gha

Gha

.github/workflows/branch.yml

@@ -0,0 +1,35 @@
+name: Branch Protection
+# This workflow is triggered on PRs to master branch on the repository
+# It fails when someone tries to make a PR against the `main` branch instead of `dev`
+on:
+  pull_request_target:
+    branches: [main]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Check PRs
+        if: github.repository == 'phac-nml/profile_dists'
+        run: |
+          { [[ ${{github.event.pull_request.head.repo.full_name }} == phac-nml/profile_dists]] && [[ $GITHUB_HEAD_REF == "dev" ]]; } || [[ $GITHUB_HEAD_REF == "patch" ]]
+
+      # If the above check failed, post a comment on the PR explaining the failure
+      # NOTE - this doesn't currently work if the PR is coming from a fork, due to limitations in GitHub actions secrets
+      - name: Post PR comment
+        if: failure()
+        uses: mshick/add-pr-comment@b8f338c590a895d50bcbfa6c5859251edc8952fc # v2
+        with:
+          message: |
+            ## This PR is against the `main` branch :x:
+
+            * Do not close this PR
+            * Click _Edit_ and change the `base` to `dev`
+            * This CI test will remain failed until you push a new commit
+
+            ---
+
+            Hello @${{ github.event.pull_request.user.login }}, This pull request is being made against the main branch, Please change your PR to be to the dev branch.
+
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+          allow-repeats: false

.github/workflows/profile_dists-pytest-workflow.yml

@@ -0,0 +1,38 @@
+
+
+name: profile_dists
+
+on:
+  push:
+    branches: ["main", "tests", "dev"]
+  pull_request:
+    branches: ["main", "tests", "dev"]
+
+
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python 3.10
+      uses: actions/setup-python@v3
+      with:
+        python-version: "3.10"
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flake8 pytest pytest-workflow==2.0.1
+        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+        pip install -e .
+    - name: Lint with flake8
+      run: |
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        pytest -o log_cli=true --git-aware

.gitignore

@@ -1,2 +1,5 @@
 **__pycache__
-*.pyc
+*.pyc
+build
+*.egg
+*.egg-info