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Way to pass lognormalized-regress out expression matrices
#322
opened Oct 5, 2024 by
Rafael-Silva-Oliveira
[BUG] continuous_factor errors out in _build_contrast
bug
Something isn't working
#313
opened Sep 11, 2024 by
jeffhsu3
[BUG] DeseqStats lists a parameter 'n_processes' which it does not accept
bug
Something isn't working
#310
opened Sep 9, 2024 by
cmeesters
Feature request: test for continuous variables and create design matrix from formula
#309
opened Sep 5, 2024 by
MaximilianNuber
Add support for sample-/gene-dependent normalization factors (e.g., length offsets from pytximport)
#305
opened Jul 31, 2024 by
maltekuehl
[BUG] DeseqDataSet.deseq2() still prints when quiet=True is set
bug
Something isn't working
#287
opened Jun 9, 2024 by
yihming
Simplify naming convention conversion between pydeseq2 and formulaic
#272
opened Apr 19, 2024 by
jeandut
[BUG] Errors saving Something isn't working
DeseqDataSet
to H5AD
bug
#254
opened Mar 14, 2024 by
jpintar
[BUG] Discrepancies between DESeq2/pyDESeq2
bug
Something isn't working
#217
opened Dec 5, 2023 by
ledwmp
Support for arbitratry design matrices and contrast vectors
enhancement
New feature or request
#213
opened Nov 28, 2023 by
grst
Add a way to create a DeseqDataSet object from normalized count matrix / preprocessed adata object
enhancement
New feature or request
#205
opened Nov 19, 2023 by
VictorCurean
Option to specify control genes for fitting size factors
enhancement
New feature or request
#204
opened Nov 15, 2023 by
mbernste
Explanation of ref_level argument of DeseqDataSet() in the tutorials
documentation
Improvements or additions to documentation
#202
opened Nov 10, 2023 by
ozanozisik
[BUG] Overflows in irls_solver and shape mismatch in _refit_without_outliers when using continuous variable
bug
Something isn't working
#201
opened Nov 8, 2023 by
ozanozisik
[RFC] Adding rpy2 (and R and deseq2) as test-only dependency.ies to have more flexible end2end tests
#190
opened Oct 19, 2023 by
jeandut
[BUG] More flexibility with figures
bug
Something isn't working
#186
opened Oct 17, 2023 by
jbschiratti
[Enhancement] New feature or request
expanded
argument not used in utils.build_design_matrix
enhancement
#184
opened Oct 17, 2023 by
khalilouardini
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Updated in the last three days: updated:>2024-10-17.