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    25 repositories

    • gRNADesign

      Public
      A pipeline to design gRNA for Cas13d and calculate RNA fold scores and mismatches to cDNA's
      Python
      •
      MIT License
      •1•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • metalhelix.github.io

      Public
      JavaScript
      •1•2•0•0•Updated Aug 11, 2022Aug 11, 2022

    • jbrowse

      Public
      A modern genome browser built with JavaScript and HTML5.
      JavaScript
      •
      Other
      •199•0•0•0•Updated Mar 15, 2018Mar 15, 2018

    • proteinfeatureview

      Public
      The Protein Feature View - a SVG library for visualising protein annotations
      JavaScript
      •
      GNU General Public License v3.0
      •10•0•0•0•Updated Sep 18, 2017Sep 18, 2017

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Jul 8, 2017Jul 8, 2017

    • sequenceserver

      Public
      Intuitive local web frontend for the BLAST bioinformatics tool
      JavaScript
      •
      Other
      •114•0•0•0•Updated May 5, 2016May 5, 2016

    • illuminati

      Public
      scripts to automate illumina secondary analysis pipeline
      Ruby
      •15•5•0•0•Updated Dec 4, 2015Dec 4, 2015

    • hastie2

      Public
      New version from hastie
      0•0•0•0•Updated May 22, 2015May 22, 2015

    • tracks

      Public
      A url-shortner and host for genomic track files
      Python
      •
      MIT License
      •0•0•0•0•Updated May 11, 2015May 11, 2015

    • geneious-postgresql

      Public
      Documention and python code to setup and maintain a postgresql multi user database for Geneious
      Python
      •2•0•0•0•Updated Sep 29, 2014Sep 29, 2014

    • aspen_demo

      Public
      Simple demo scripts for Aspen Workshop
      Shell
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2014Mar 20, 2014

    • bio.brew

      Public
      A tiny package manager for crucial unix and bioinformatics tools
      Shell
      •10•0•0•0•Updated Mar 13, 2014Mar 13, 2014

    • bam_stats

      Public
      Meaningful stats for bam files
      Ruby
      •0•2•3•0•Updated Dec 4, 2013Dec 4, 2013

    • bioreports

      Public
      JavaScript
      •0•1•0•0•Updated Aug 14, 2013Aug 14, 2013

    • SIMRCluster

      Public
      A place to find info and tools on how to use the institute cluster
      Perl
      •0•1•0•0•Updated Aug 2, 2013Aug 2, 2013

    • pipette

      Public
      variant discovery and annotation using GATK and Ensembl
      Ruby
      •2•17•0•0•Updated Jun 27, 2013Jun 27, 2013

    • smedgd

      Public
      website for smedgd
      Ruby
      •0•0•0•0•Updated Jun 20, 2013Jun 20, 2013

    • lims_info

      Public
      Perl
      •
      Other
      •0•0•0•0•Updated Jun 14, 2013Jun 14, 2013

    • seqbbs

      Public
      R package for SeqBBS paper
      R
      •0•0•0•0•Updated May 22, 2013May 22, 2013

    • spikein_analysis

      Public
      Basic ERCC spikein analysis
      Ruby
      •1•3•1•0•Updated Dec 19, 2012Dec 19, 2012

    • hastie

      Public
      Ruby
      •
      MIT License
      •2•0•0•0•Updated Nov 21, 2012Nov 21, 2012

    • jekyll

      Public
      Jekyll is a blog-aware, static site generator in Ruby
      Ruby
      •
      MIT License
      •10k•1•0•0•Updated Nov 6, 2012Nov 6, 2012

    • unix_intro

      Public
      Ruby
      •1•0•0•0•Updated Aug 27, 2012Aug 27, 2012

    • igenome_download

      Public
      bulk downloads from igenome
      Ruby
      •0•0•0•0•Updated Aug 10, 2012Aug 10, 2012

    • blertr

      Public
      simple alerting for bash when a command completes
      Ruby
      •
      Other
      •1•0•0•0•Updated Sep 8, 2011Sep 8, 2011