Repositories list

• spatial_rare_alleles

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• NovembreLab.github.io

  Public
  Novembre Lab Website

  SCSS

  •1•1•3•0•Updated Oct 22, 2024Oct 22, 2024

• plink-ng

  Public
  A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is now focused on building out support for multiallelic, phased, and dosage data in PLINK 2.0.

  C

  •125•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• feems

  Public
  Jupyter Notebook

  •

  MIT License

  •14•17•15•1•Updated Jun 30, 2023Jun 30, 2023

• ggv

  Public
  websitedata-visualization

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •6•7•9•0•Updated Mar 27, 2023Mar 27, 2023

• ENCprime

  Public
  ENCprime : Command-line utility for measuring codon bias. Implements methods of Novembre (2002) Mol Biol Evol 19 (8): 1390-1394.

  methods

  C

  •4•0•0•0•Updated Dec 9, 2021Dec 9, 2021

• montecarloop

  Public
  Monte Carlo Simulation Utility

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 22, 2021Aug 22, 2021

• HGDP_PopStruct_Exercise

  Public
  A classroom exercise using HGDP SNP data to introduce population structure concepts

  workshopteaching-materials

  OpenEdge ABL

  •16•13•4•0•Updated Jul 27, 2021Jul 27, 2021

• admixture

  Public
  Repository for the admixture software

  1•6•5•0•Updated Apr 27, 2020Apr 27, 2020

• coal-lab

  Public
  Lab for HVD

  Jupyter Notebook

  •3•0•0•0•Updated Apr 27, 2020Apr 27, 2020

• ancient-sardinia

  Public
  Python

  •1•2•0•0•Updated Feb 24, 2020Feb 24, 2020

• PCAviz

  Public
  An R package to help in plotting PCA results nicely.

  HTML

  •

  GNU General Public License v3.0

  •5•13•5•0•Updated Jan 16, 2020Jan 16, 2020

• eems-around-the-world

  Public
  Repo to analyze population genetic data with many different methods

  structuredata-visualizationpopulation-genetics+ 3admixtureprinciple-component-analysissnakemake-workflow

  R

  •8•15•0•0•Updated Oct 23, 2019Oct 23, 2019

• 1000genomes_Selection_Exercise

  Public
  1000 Genomes Selection Exercise

  teaching-materialsworkshop

  Shell

  •8•8•5•1•Updated Aug 15, 2019Aug 15, 2019

• intro_genotype_proportions_workshop

  Public
  Intro to RStudio and basic population genetics based on inspecting genotype proportions

  workshopteaching-materials

  2•1•1•0•Updated Aug 14, 2019Aug 14, 2019

• RGGV

  Public
  R package for GGV mapping.

  HTML

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 7, 2018Jun 7, 2018

• ancpy

  Public
  A python package for ancient DNA

  Python

  •0•0•6•0•Updated Apr 6, 2018Apr 6, 2018

• eems-merge

  Public
  Python

  •0•1•0•0•Updated Apr 3, 2018Apr 3, 2018

• imputation_exercise

  Public
  Introductory Workshop for Imputation and GWAS

  workshopteaching-materials

  Shell

  •1•4•0•0•Updated Apr 15, 2017Apr 15, 2017

• ggv-api

  Public
  Python

  •0•1•1•0•Updated Oct 26, 2016Oct 26, 2016

• Novembre_etal_2008_misc

  Public
  Resources related to Novembre et al (2008) Nature 456:98-101

  data

  7•10•1•0•Updated Apr 25, 2016Apr 25, 2016

• raddle

  Public
  The Raddle software for Rare-Allele-based Distance of Dispersal Estimation, based on Novembre & Slatkin (2009)

  methods

  C

  •1•0•0•0•Updated Jun 28, 2015Jun 28, 2015

• isoscatR

  Public
  R package for smoothed and continuous assignment testing (SCAT) of genetic samples

  Shell

  •5•0•0•0•Updated Mar 4, 2015Mar 4, 2015