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Add 'intercostal element'.
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The 'intercostal vein' (UBERON:0012197) and 'intercostal artery'
(UBERON:0005612) are said to drain and supply blood from and to the
'intercostal space' (UBERON:0012198).

In both cases, this violates the range restriction of the 'vessel drains
blood from' (RO:0020102) and 'vessel supplies blood to' (RO:0020101)
relations, because 'intercostal space' is an immaterial anatomical
entity.

We create a new term 'intercostal element' intended to refer to any
anatomical structure located within an intercostal space (e.g.
intercostal muscles, intercostal lymph nodes), and use the new term to
replace 'intercostal space' in the relationships with 'intercostal vein'
and 'intercostal arteries'.
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gouttegd committed Nov 14, 2024
1 parent 363e27d commit 3c2a69a
Showing 1 changed file with 11 additions and 2 deletions.
13 changes: 11 additions & 2 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -103627,7 +103627,7 @@ xref: UMLS:C0459917 {source="ncithesaurus:Intercostal_Artery"}
is_a: UBERON:0001637 ! artery
relationship: branching_part_of UBERON:0001515 ! thoracic aorta
relationship: develops_from UBERON:0005599 {source="EHDAA2"} ! common dorsal aorta
relationship: vessel_supplies_blood_to UBERON:0012198 ! intercostal space
relationship: vessel_supplies_blood_to UBERON:8450004 ! intercostal element
property_value: editor_note "TODO - add children. Mouse has dorsal, ventral and upper; humans have anterior, posterior; teleost has segmental" xsd:string

[Term]
Expand Down Expand Up @@ -150886,7 +150886,7 @@ xref: MA:0003166
xref: SCTID:281057004
xref: Wikipedia:Intercostal_veins
intersection_of: UBERON:0001638 ! vein
intersection_of: vessel_drains_blood_from UBERON:0012198 ! intercostal space
intersection_of: vessel_drains_blood_from UBERON:8450004 ! intercostal element

[Term]
id: UBERON:0012198
Expand Down Expand Up @@ -223145,6 +223145,15 @@ intersection_of: part_of UBERON:0000922 ! embryo
relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 ! Damien Goutte-Gattat
property_value: dcterms-date "2024-09-12T14:40:00Z" xsd:dateTime

[Term]
id: UBERON:8450004
name: intercostal element
def: "An anatomical structure located within an intercostal space." [https://orcid.org/0000-0002-6095-8718]
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: located_in UBERON:0012198 ! intercostal space
relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 ! Damien Goutte-Gattat
property_value: dcterms-date "2024-11-11T17:58:05Z" xsd:dateTime

[Term]
id: UBERON:8470000
name: placental blood
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