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Sarek bcftools normalization #6390

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Sarek bcftools normalization

Sarek bcftools normalization #6390

Re-run triggered October 17, 2024 12:23
@maxulyssemaxulysse
#1682
Patricie34:sarek_bcftools_norm
Status Failure
Total duration 14m 14s
Artifacts –

ci.yml

on: pull_request
Check for changes (nf-test)
5s
Check for changes (nf-test)
Check for changes (pytest)
6s
Check for changes (pytest)
Matrix: nftest
Matrix: pytest
confirm-pass
0s
confirm-pass
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3 errors and 2 warnings
concatenate_vcfs docker NF latest-everything
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:27:40 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:28:12 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:28:40 GMT+0000 (Coordinated Universal Time)
concatenate_vcfs docker NF 24.04.2
Process returned exit code 1 Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:27:32 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:28:08 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:28:41 GMT+0000 (Coordinated Universal Time)
confirm-pass
Process completed with exit code 1.
concatenate_vcfs docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
concatenate_vcfs docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log /home/ubuntu/pytest_workflow_*/*/log.out /home/ubuntu/pytest_workflow_*/*/log.err /home/ubuntu/pytest_workflow_*/*/work !/home/ubuntu/pytest_workflow_*/*/work/conda !/home/ubuntu/pytest_workflow_*/*/work/singularity !/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.