Code

ENH: Coreg GUI#9689

Code

Merged

larsoner merged 238 commits intomne-tools:mainmne-tools/mne-python:mainfrom GuillaumeFavelier:enh/coreg_guiGuillaumeFavelier/mne-python:enh/coreg_guiCopy head branch name to clipboardOct 27, 2021

+1,132-22

Commits

Commits on Aug 23, 2021

• add gui

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• Do not trigger CIs [ci skip]

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• add widgets [ci skip]

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  74d6973

• improve dock file button [ci skip]

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• comment

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• update desc

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• simplify [ci skip]

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  26f09d0

• reorder [ci skip]

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• add directory filter

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• add support for directory [ci skip]

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• set minimal [ci skip]

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• sync file button widget -> file text widget [ci skip]

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Commits on Aug 24, 2021

• proto: transparent skin surface [ci skip]

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• workaround for plot_alignment

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• refactor

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• proto: switch subject [ci skip]

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• plot(verbose=False)

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• proto: switch subjects dir [ci skip]

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  2bbbb8c

• remove groupbox

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• comment

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• proto: fit_icp [ci skip]

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• refactor

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• proto: dig weights [ci skip]

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• comment

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• add self._verbose

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Commits on Aug 25, 2021

• proto: display parameters with 4 decimals [ci skip]

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• proto: omit hsp

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• fix [ci skip]

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• proto: reset [ci skip]

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• proto: set scale mode

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• refactor to fix

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• refactor [ci skip]

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• proto: lock fids [ci skip]

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Commits on Aug 26, 2021

• Merge branch 'main' into enh/coreg_gui [ci skip]

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• move ui elements [ci skip]

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• move ui elements

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• rename [ci skip]

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• proto: high res head [ci skip]

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• add more point weights [ci skip]

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• proto: save trans [ci skip]

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• proto: read trans [ci skip]

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• proto: icp fid match

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• rename

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• newline

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• proto: load info [ci skip]

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• rename

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• TST: change units to mm [ci skip]

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Commits on Aug 27, 2021

• fix radio buttons [ci skip]

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  bd6b435

• proto: display fids

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• fix [ci skip]

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• proto: set fiducial file [ci skip]

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• refactor

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• refactor

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• refactor

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Commits on Aug 30, 2021

• migrate to traitlets [ci skip]

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Commits on Aug 31, 2021

• migrate to traitlets [ci skip]

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Commits on Sep 1, 2021

• fix [ci skip]

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• proto: edit parameters [ci skip]

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• proto: edit other weights [ci skip]

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• fix [ci skip]

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• Fix notebook [ci skip]

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Commits on Sep 7, 2021

• Merge branch 'main' into enh/coreg_gui [ci skip]

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• tst: plot_head_surface [ci skip]

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Commits on Sep 8, 2021

• add _update_head

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• add _add_head_fiducials [ci skip]

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Commits on Sep 27, 2021

• Merge branch 'main' into enh/coreg_gui

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  committed
  ee75069

• add traitlets dep

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• fix

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• Add _add_head_shape_points [ci skip]

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• fix [ci skip]

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• fix [ci skip]

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  4a42281

• Add _emit_coreg_modified [ci skip]

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• refactor [ci skip]

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• fix [ci skip]

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  115b17e

Commits on Sep 28, 2021

• add _plot_hpi_coils [ci skip]

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• refactor

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• refactor [ci skip]

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• nitpick

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• nitpick

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• add _add_mri_fiducials [ci skip]

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• refactor

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• improve mri fids [ci skip]

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• improve mri fids [ci skip]

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• refactor [ci skip]

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  6f79a84

• remove cruft [ci skip]

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  d2db266

Commits on Sep 29, 2021

• add _grow_hair_changed [ci skip]

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• fix

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  0cecb68

• change bgcolor [ci skip]

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  36ad5be

• prepare lock_fids UX [ci skip]

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• prepare picking [ci skip]

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  26d8708

• enable cell -> vertex picking [ci skip]

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Commits on Sep 30, 2021

• display picking msg [ci skip]

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• rename [ci skip]

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• nitpick

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  188e039

• refactor [ci skip]

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  6b8eb5b

• improve picking [ci skip]

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  committed
  7b55b8c

• improve UX consistency [ci skip]

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  committed
  c8742e2

• add _add_hpi_coils [ci skip]

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  committed
  aebade4

• refactor [ci skip]

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  committed
  7f960a3

• improve UX consistency [ci skip]

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  committed
  9f3548d

• improve UX consistency [ci skip]

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  committed
  e086cf6

Commits on Oct 1, 2021

• prepare for glyph scaling [ci skip]

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  committed
  4fb40ab

• add _orient_glyphs_changed

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  723a926

• improve UX consistency

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  d051353

• fix opacity [ci skip]

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  committed
  79ea34b

• orient hpi coils too

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  committed
  a487402

• fix

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  committed
  0f91e5a

• refactor [ci skip]

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  committed
  c7a8917

• Merge branch 'main' into enh/coreg_gui [ci skip]

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  committed
  15a5ef7

Commits on Oct 4, 2021

• update picking UX [ci skip]

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  committed
  fb4dce8

• improve glyph scaling [ci skip]

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  committed
  9e00fec

• TST: lock scale parameters

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  committed
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• fix

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  6af2c40

• allow partial update

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  f5de425

• refactor [ci skip]

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  0b5455e

• rename [ci skip]

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Commits on Oct 5, 2021

• Merge branch 'main' into enh/coreg_gui [ci skip]

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  committed
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• fix

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  64d36ca

• add support for hsp mask

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  committed
  749318c

• add _reset_omit_hsp_filter [ci skip]

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  committed
  ac0f78d

• prepare for plotting EEG channels

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  815067f

• add _add_eeg_channels [ci skip]

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  9dbde18

Commits on Oct 6, 2021

• improve UX consistency [ci skip]

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  1ff2098

• TMP: faster init

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• better init [ci skip]

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• refactor [ci skip]

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• add _update_parameters [ci skip]

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• refactor

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• refactor [ci skip]

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  committed
  32a3519

• fix plot sensors

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• fix sensor opacity

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• allow extra renderer kwargs [ci skip]

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• selecting a fiducial updates the view [ci skip]

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  committed
  58ae760

• connect scale combo boxes

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  committed
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• add _lock_plot

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• add _set_fiducial [ci skip]

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  committed
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• nitpick

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• fix [ci skip]

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  committed
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Commits on Oct 7, 2021

• add _set_sensors_visibility [ci skip]

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  committed
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• add _forward_widget_command [ci skip]

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• refactor [ci skip]

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• refactor

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• refactor [ci skip]

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  committed
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• improve UX consistency [ci skip]

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  committed
  b94aea1

• refactor [ci skip]

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  committed
  8e791b8

Commits on Oct 11, 2021

• TST: add mne coreg --pyvista [ci skip]

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  committed
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• fix [ci skip]

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  committed
  1a0cdc3

• fix opacity [ci skip]

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  committed
  fdbe4ab

• update default value

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• add support for trans option [ci skip]

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  committed
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• refactor [ci skip]

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Commits on Oct 12, 2021

• revert toolbar changes

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  committed
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• mark head surface for picking

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  committed
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• refactor

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  committed
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• fix fids [ci skip]

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  committed
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• use _defaults [ci skip]

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  committed
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• nitpick [ci skip]

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  committed
  54643ed

Commits on Oct 13, 2021

• change spin box step

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  committed
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• update plot at each fit_icp iteration [ci skip]

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  committed
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• nitpick

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• move to mne/gui [ci skip]

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  committed
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• fix toolbar [ci skip]

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  committed
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• add _display_message [ci skip]

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  committed
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Commits on Oct 14, 2021

• fix notebook [ci skip]

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  committed
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• Merge branch 'main' into enh/coreg_gui

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  committed
  0e2219a

• allow micro adjustments during picking

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  committed
  392b0d1

• add doc

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  committed
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• TST: fix compat/minimal

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  committed
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• nitpick

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Commits on Oct 15, 2021

• reduce number of actors

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  committed
  8235f32

• orient eeg channels glyphs

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  committed
  921c955

• refactor

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  committed
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• change default

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  committed
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• refactor

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  committed
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• restore temporarily

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• fix

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  18b9009

• update doc

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  e790d18

• update doc conf

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• fix

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  28f8551

• restore

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  committed
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• update layout

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  committed
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• revert 01ed71e

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Commits on Oct 18, 2021

• add support for info_file=None [ci skip]

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  committed
  e96a2ff

• refine requirements [ci skip]

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  committed
  9b1fef6

• refactor [ci skip]

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  8e800be

• refactor

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• refactor to_cf_t

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• add _sensor_opacity [ci skip]

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  committed
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• remove cruft

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• refactor defaults [ci skip]

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• expose sensor_opacity [ci skip]

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• backward compatibility with mayavi opacity at init [ci skip]

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  committed
  c088f9f

• fix [ci skip]

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  886e0a4

• finalize _lock_head_opacity [ci skip]

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  committed
  bb36394

Commits on Oct 19, 2021

• use getOpenFileName [ci skip]

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  committed
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• refactor

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  committed
  9bf49ac

• unlock fids at init

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  committed
  0e2a06d

• fix head surf

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  committed
  83230e7

• restore temporarily

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  committed
  c6d18bb

• fix sensors

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  committed
  b60d51e

• disable eeg in test_plot_alignment_meg temporarily

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  committed
  86be997

• do not support --head-opacity

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  committed
  b5863e5

• allow fids picking when info is none

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  committed
  d398be3

• update sensor list

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  committed
  a989958

• update sensor list

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  committed
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• use getSaveFileName

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  committed
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• fix

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  committed
  58ecb13

Commits on Oct 20, 2021

• Merge branch 'main' into enh/coreg_gui

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Commits on Oct 21, 2021

• Merge branch 'main' into enh/coreg_gui

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Commits on Oct 22, 2021

• Merge branch 'main' into enh/coreg_gui

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  committed
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Commits on Oct 23, 2021

• Merge branch 'main' into enh/coreg_gui

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  committed
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Commits on Oct 25, 2021

• improve coverage

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  committed
  759c0b7

• add a close function

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  committed
  874b34d

• fix import

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  committed
  b3f20d9

• requires pyvistaqt

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  committed
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• move to existing file

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• nitpick

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  committed
  6111b89

• check defaults too

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  committed
  f5458bc

• Merge branch 'main' into enh/coreg_gui

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• use _get_3d_backend

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• use coregistration

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• reorder imports

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• fix

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• restore

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  e0c4960

• add basic support for verbose

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• fix

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  5ba4527

• warn unsupported parameters

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  f77c172

Commits on Oct 26, 2021

• TST: show the renderer

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  3b7b28f

• Revert "TST: show the renderer"

  Show description for bbf00ce
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  bbf00ce

• TST: use get_config

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  1eb4448

• use config

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  1fa6e51

• fix

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  6379605

• restore lighting

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• Merge branch 'main' into enh/coreg_gui

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  d3a0195

• add _check_fif

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• fix style

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  committed
  dafb4fc

• reverse _check_fif logic

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Commits on Oct 27, 2021

• Merge branch 'main' into enh/coreg_gui

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  committed
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