Merge pull request #106 from mengxiao/master

Fix input path in Snakefile.
liulab-dfci · Jan 20, 2021 · 28e2927 · 28e2927
2 parents 3095955 + 0025fad
commit 28e2927
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/MAESTRO/Snakemake/scATAC/Snakefile b/MAESTRO/Snakemake/scATAC/Snakefile
@@ -1158,8 +1158,7 @@ rule scatac_qcfilter:
 
 rule scatac_genescore:
     input:
-        filtercount = "Result/QC/%s_filtered_
-        unt.h5" %(config["outprefix"]),
+        filtercount = "Result/QC/%s_filtered_peak_count.h5" %(config["outprefix"]),
         genebed = "%s/annotations/%s_ensembl.bed" %(SCRIPT_PATH, config["species"]),
     output:
         genescore = "Result/Analysis/%s_gene_score.h5" %(config["outprefix"])