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feat: 3rd use environment vars to workaround issues #94

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merged 1 commit into from
Feb 1, 2024
Merged

feat: 3rd use environment vars to workaround issues #94

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57 changes: 45 additions & 12 deletions {{cookiecutter.project_name}}/Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,14 @@ SHELL := bash
.SUFFIXES:
.SECONDARY:

# environment variables
.EXPORT_ALL_VARIABLES:
ifdef LINKML_ENVIRONMENT_FILENAME
include ${LINKML_ENVIRONMENT_FILENAME}
else
include config.env
endif

RUN = poetry run
# get values from about.yaml file
SCHEMA_NAME = $(shell ${SHELL} ./utils/get-value.sh name)
Expand All @@ -21,17 +29,29 @@ SHEET_ID = $(shell ${SHELL} ./utils/get-value.sh google_sheet_id)
SHEET_TABS = $(shell ${SHELL} ./utils/get-value.sh google_sheet_tabs)
SHEET_MODULE_PATH = $(SOURCE_SCHEMA_DIR)/$(SHEET_MODULE).yaml

# environment variables
include config.env
CONFIG_YAML =
ifdef LINKML_GENERATORS_CONFIG_YAML
CONFIG_YAML = ${LINKML_GENERATORS_CONFIG_YAML}
endif

GEN_PARGS =
ifdef LINKML_GENERATORS_PROJECT_ARGS
GEN_PARGS = ${LINKML_GENERATORS_PROJECT_ARGS}
GEN_DOC_ARGS =
ifdef LINKML_GENERATORS_DOC_ARGS
GEN_DOC_ARGS = ${LINKML_GENERATORS_DOC_ARGS}
endif

GEN_DARGS =
ifdef LINKML_GENERATORS_MARKDOWN_ARGS
GEN_DARGS = ${LINKML_GENERATORS_MARKDOWN_ARGS}
GEN_OWL_ARGS =
ifdef LINKML_GENERATORS_OWL_ARGS
GEN_OWL_ARGS = ${LINKML_GENERATORS_OWL_ARGS}
endif

GEN_JAVA_ARGS =
ifdef LINKML_GENERATORS_JAVA_ARGS
GEN_JAVA_ARGS = ${LINKML_GENERATORS_JAVA_ARGS}
endif

GEN_TS_ARGS =
ifdef LINKML_GENERATORS_TYPESCRIPT_ARGS
GEN_TS_ARGS = ${LINKML_GENERATORS_TYPESCRIPT_ARGS}
endif


Expand Down Expand Up @@ -103,16 +123,29 @@ gen-examples:
# generates all project files
{% if cookiecutter.use_schemasheets == "Yes" %}
gen-project: $(PYMODEL) compile-sheets
$(RUN) gen-project ${GEN_PARGS} -d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)
$(RUN) gen-project ${CONFIG_YAML} -d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)
{% else %}
gen-project: $(PYMODEL)
$(RUN) gen-project ${GEN_PARGS} -d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)
$(RUN) gen-project ${CONFIG_YAML} -d $(DEST) $(SOURCE_SCHEMA_PATH) && mv $(DEST)/*.py $(PYMODEL)
{% endif %}

# non-empty arg triggers owl (workaround https://github.com/linkml/linkml/issues/1453)
ifneq ($(strip ${GEN_OWL_ARGS}),)
$(RUN) gen-owl ${GEN_OWL_ARGS} -o ${DEST}/owl/${SCHEMA_NAME}.owl.ttl $(SOURCE_SCHEMA_PATH)
endif
# non-empty arg triggers java
ifneq ($(strip ${GEN_JAVA_ARGS}),)
$(RUN) gen-java ${GEN_JAVA_ARGS} --output-directory ${DEST}/java/ $(SOURCE_SCHEMA_PATH)
endif
# non-empty arg triggers typescript
ifneq ($(strip ${GEN_TS_ARGS}),)
$(RUN) gen-typescript ${GEN_TS_ARGS} $(SOURCE_SCHEMA_PATH) >${DEST}/typescript/${SCHEMA_NAME}.ts
endif

test: test-schema test-python test-examples

test-schema:
$(RUN) gen-project ${GEN_PARGS} -d tmp $(SOURCE_SCHEMA_PATH)
$(RUN) gen-project ${CONFIG_YAML} -d tmp $(SOURCE_SCHEMA_PATH)

test-python:
$(RUN) python -m unittest discover
Expand Down Expand Up @@ -158,7 +191,7 @@ $(DOCDIR):

gendoc: $(DOCDIR)
cp -rf $(SRC)/docs/* $(DOCDIR) ; \
$(RUN) gen-doc ${GEN_DARGS} -d $(DOCDIR) $(SOURCE_SCHEMA_PATH)
$(RUN) gen-doc ${GEN_DOC_ARGS} -d $(DOCDIR) $(SOURCE_SCHEMA_PATH)

testdoc: gendoc serve

Expand Down
19 changes: 14 additions & 5 deletions {{cookiecutter.project_name}}/config.env
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Original file line number Diff line number Diff line change
@@ -1,8 +1,17 @@
LINKML_GENERATORS_PROJECT_ARGS=--config-file config.yaml

### Extra layer of configuration for Makefile beyond
### what 'gen-project --config-file config.yaml' provides.
### Uncomment and set environment variables as needed.
###### linkml generator variables, used by makefile

# LINKML_GENERATORS_MARKDOWN_ARGS=--no-mergeimports
## gen-project configuration file
LINKML_GENERATORS_CONFIG_YAML= --config-file config.yaml

## pass args if gendoc ignores config.yaml (i.e. --no-mergeimports)
LINKML_GENERATORS_DOC_ARGS=

## pass args to workaround genowl rdfs config bug (linkml#1453)
## (i.e. --no-type-objects --no-metaclasses --metadata-profile rdfs)
LINKML_GENERATORS_OWL_ARGS=

## pass args to trigger experimental java/typescript generation
LINKML_GENERATORS_JAVA_ARGS=
LINKML_GENERATORS_TYPESCRIPT_ARGS=

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