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Incorproate linkml-runtime, linkml-model/linkml-files.py changes from linkml-runtime #201

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fix tests according to changes in linkml-runtime: for consideration i…

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Incorproate linkml-runtime, linkml-model/linkml-files.py changes from linkml-runtime #201

fix tests according to changes in linkml-runtime: for consideration i…
e2b031b
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