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This repository has been archived by the owner on Jan 14, 2022. It is now read-only.

Issues: hbctraining/DGE_workshop_salmon

11 Open 40 Closed
11 Open 40 Closed
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Issues list

Add link to Mike Love's new book
#53 opened Feb 4, 2020 by marypiper
do we set lfcThreshold in results or lfcShrink or both? enhancement New feature or request
#49 opened Dec 11, 2019 by mistrm82
@mistrm82
PCA link not working bug Something isn't working
#47 opened Dec 10, 2019 by jihe-liu
@rkhetani
Reduce GO and add table of databases enhancement New feature or request
#43 opened Oct 23, 2019 by rkhetani
@rkhetani
make this a 1.5 day workshop? enhancement New feature or request
#42 opened Oct 23, 2019 by mistrm82
1
coef vs contrast? bug Something isn't working
#41 opened Oct 23, 2019 by mistrm82
@mistrm82
2
Change to log2FC shrinkage to apeglm following advice in Mike bug Something isn't working
#33 opened Oct 21, 2019 by marypiper
@mistrm82 @marypiper
2
Update workflow image with log2FC shrinkage after DE testing bug Something isn't working
#32 opened Oct 21, 2019 by marypiper
@rkhetani
1
Arguments and functions each on own line and comment all code chunks enhancement New feature or request
#11 opened Aug 6, 2019 by marypiper
@rkhetani @mistrm82
@marypiper @jihe-liu
3
Shorten GO part of functional analysis and some of the code (MP) bug Something isn't working
#9 opened Aug 6, 2019 by marypiper
@marypiper
1
change sleuth to mike's new package ? enhancement New feature or request
#3 opened Jan 29, 2019 by mistrm82
1
ProTip! Exclude everything labeled bug with -label:bug.