Adding rnabio part 1 lecture slides and readme #56
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| NOTE: Using Docker and the persistent "workspace" volume we attached will allow you to start/stop as you wish. EVERYTIME YOU LOGIN TO THE DOCKER CONTAINER, YOU MUST LOGIN AS THE `ubuntu` USER *AND* `source ~/.bashrc` UPON EACH LOGIN. |
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s/EVERYTIME/EVERY TIME/
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| This is the same command as what is mentioned in the course webpage, except that instead of mounting (`-v` flag) `/home/ubuntu/workspace/rnaseq` to the docker image- which is where the data was stored for students running through the course on an AMI, you will instead mount whatever your current directory is. Also, this is different from an interactive session where we are able to enter the docker and run commands within it. Instead we are executing our command directly all in that one line of code. | ||
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| 2. In various parts of RNAbio, in order to view HTML files, plots, etc., the tutorial suggests going to a public IPV4 address link in your browser window. That is only needed for the AMI. Since you'll be running everything locally, you can just find the files in your Finder window or File Explorer and open them directly! |
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Suggested change:
Since you'll be running everything locally, you can use open file.html on mac, or explorer.exe file.html on Windows/WSL2 to open the file in your default browser.
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| To exit `less`, type `q`. | ||
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| ### Known Issues/ Discrepancies from RNAbio website |
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At some point, we should consider forking the RNAbio content and just incorporating these few changes. It could be a "local version" of RNAbio that would be useful for lots of folks that can't spin up an AMI. If you don't have time this year, that's fine, but something to think about for the future.
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| ## Homework Assignments | ||
| 1. Finish Module 1 - [Inputs](https://rnabio.org/module-01-inputs/0001/01/01/Intro_to_Inputs/) | ||
| 2. Complete Module 2 - [Alignment](https://rnabio.org/module-02-alignment/0002/01/01/Intro_to_Alignment/) |
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We have students taking the course for credit and while we're not grading a bunch of questions, we've been asking for some kind of screenshot or answer that proves they made it to the end of the homework. Any suggestions for that?
For credit students:
Turn in XXXXXX to Jenny as proof of completion
Adding rnabio part 1 lecture slides and updated readme for this year.