LMT-USV-Toolbox

Live Mouse Tracker Ultrasonic Vocalization Toolbox

published in TODO

package needed

• pip install librosa

synchronisation pipeline

Importation and synchronisation of wav files with LMT are performed by the package LMT.USV.importer

useful links

• test your own .wav files online without any install at https://usv.pasteur.cloud
• download standalone version of the USV detection program at https://livemousetracker.org, ultrasonic section
• live mouse tracker's documentation : https://livemousetracker.org

Converting sampling rate of wav files to 300kHz

• Files should be at 300kHz to perform detection in it. You can convert you files using the LMT.USV.convert.convertTo300kHz.py script. Existing file is kept, a new file with .converted.wav extension is created

List of scripts used to create figures of the Frontiers article.

Figures' scripts are in the package LMT.USV.figure

Main figures

• Figure 2: [3] Figure2_behavioral_profile_pairs.py
• Figure 3: [2] FigureUsageUSVBurstShortVersion.py
• Figure 4: AcousticAnalysesPerContextStatsBoxplots5we3mo7mo.py
• Figure 5: [pfig] AcousticAnalysesPerContext.py
• Figure 6: [pp] Compute_Speed_Duration_Events_With_Usv.py
• Figure 7: [3] FigureUsageUsvBurstShortVersion.py

Supplementary figures:

• S1. [1] in Figure2_behavioral_profile_pairs.py
• S2. [1] in Figure2_behavioral_profile_pairs.py
• S3. [2] in Figure2_behavioral_profile_pairs.py
• S4. [2] in Figure2_behavioral_profile_pairs.py
• S5. Codes from Fab, separate fig
• S6. Codes from Fab, separate fig
• S7. [pv] AcousticAnalysesAllUsv.py
• S8. [page] AcousticAnalysesAllUsv.py
• S9. [pko] AcousticAnalysesAllUsv.py
• S10. Separate fig
• S11. Separate fig
• S13. [p] acousticAnalysesPerContext.py
• S14. [page] acousticAnalysesPerContext.py
• S15. [page] acousticAnalysesPerContext.py
• S16. [pko] acousticAnalysesPerContext.py
• S17. [sfig] acousticAnalysesPerContext.py
• S18. [sfig] acousticAnalysesPerContext.py
• S19. [sfig] acousticAnalysesPerContext.py
• S20. [sfig1] acousticAnalysesPerContext.py
• S21. [ppko] Compute_Speed_Duration_Events_With_Usv.py

Watch a presentation about USV and LMT: