BCFtools csq #35
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # name of workflow that will be displayed on the actions page | |
| name: Create README.md | |
| # execute workflow only when these files are modified | |
| on: | |
| push: | |
| paths: | |
| - 'eg/**' | |
| - 'create_readme.sh' | |
| - 'readme.Rmd' | |
| - '.github/workflows/create_readme.yml' | |
| - 'script/tools_for_readme.sh' | |
| # a list of the jobs that run as part of the workflow | |
| jobs: | |
| make_markdown: | |
| runs-on: ubuntu-latest | |
| # the type of runner to run the given job | |
| container: davetang/r_build:4.1.2 | |
| # a list of the steps that will run as part of the job | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server hosted by GitHub!" | |
| - run: echo "The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v2 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - run: echo "The workflow is now ready to test your code on the runner." | |
| - name: Global installs | |
| run: | | |
| apt update && apt install -y pandoc man-db | |
| yes | unminimize | |
| - name: Install tools for README | |
| run: script/tools_for_readme.sh | |
| - name: Build README | |
| run: ./create_readme.sh | |
| - name: Commit report | |
| run: | | |
| git config --global user.name 'GitHub Actions' | |
| git config --global user.email '[email protected]' | |
| git config --global --add safe.directory /__w/learning_vcf_file/learning_vcf_file | |
| git add "README.md" | |
| git commit -m "Build README.md" | |
| git push origin main | |
| - name: Build MkDocs site | |
| run: | | |
| cd mkdocs && mkdocs build | |
| - name: Deploy MkDocs | |
| run: | | |
| git branch gh-pages | |
| git pull | |
| cd mkdocs && mkdocs gh-deploy | |
| - run: echo "This job's status is ${{ job.status }}." | |