Remove unserializable default params for pattern and layered fingerprints

[alkorolyov-selvita]

Removed unhashable list [] params due to failure to use pattern and layered fingerprint calculators in dm.parallelized() and in FPVecTransformer(n_jobs=-1).

Changelogs

Remove list [] params from FP_DEF_PARAMS for layerd and pattern fingerprints.

[zhu0619]

@alkorolyov-selvita
I can't reproduce the issue.
This is the code that works for me.

import datamol as dm
from molfeat.trans.fp import FPVecTransformer
smiles = dm.freesolv().iloc[:100].smiles
transformer = FPVecTransformer(kind='pattern', dtype=float)

dm.parallelized(fn=transformer, inputs_list=smiles, n_jobs=-1)

Could you post the code which causes the issue for you here ?

[alkorolyov-selvita]

@zhu0619
Of course, I create a dedicated issue with detailed logs and examples #113
quick example of failed code on Windows (it seems to work fine on Ubuntu):

import datamol as dm
from molfeat.trans import FPVecTransformer, FeatConcat

trans = FPVecTransformer('pattern', n_jobs=-1)

df = dm.data.freesolv().iloc[:100]

trans(df.smiles).shape

[zhu0619]

I am able to reproduce the error now.
Removing the default parameters might solve the issue temporarily.
The serialization issue still exists if customized FPCalculator parameters are provided.

I would say to update the __setstate__ function to deal with any list arguments.