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pass *meta* information for genome input in freebayes modules #31

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merged 3 commits into from
Dec 20, 2023

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@bunop bunop commented Dec 20, 2023

PR checklist

Closes #30

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@bunop bunop added dependencies Pull requests that update a dependency file enhancement New feature or request performance Improve the performance or better resource management labels Dec 20, 2023
@bunop bunop merged commit 10aac07 into master Dec 20, 2023
19 of 20 checks passed
@bunop bunop deleted the issue-30 branch February 26, 2024 15:41
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[FEATURE] pass *meta* information for genome input in freebayes modules
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