🚚 move modules from nf-core to cnr-ibba folder

cnr-ibba · Mar 15, 2024 · 4405d06 · 4405d06
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diff --git a/...s/nf-core/bcftools/concat/environment.yml → .../cnr-ibba/bcftools/concat/environment.yml b/...s/nf-core/bcftools/concat/environment.yml → .../cnr-ibba/bcftools/concat/environment.yml
diff --git a/modules/nf-core/bcftools/concat/main.nf → modules/cnr-ibba/bcftools/concat/main.nf b/modules/nf-core/bcftools/concat/main.nf → modules/cnr-ibba/bcftools/concat/main.nf
diff --git a/modules/nf-core/bcftools/concat/meta.yml → modules/cnr-ibba/bcftools/concat/meta.yml b/modules/nf-core/bcftools/concat/meta.yml → modules/cnr-ibba/bcftools/concat/meta.yml
diff --git a/...nf-core/samtools/coverage/environment.yml → ...nr-ibba/samtools/coverage/environment.yml b/...nf-core/samtools/coverage/environment.yml → ...nr-ibba/samtools/coverage/environment.yml
diff --git a/modules/nf-core/samtools/coverage/main.nf → modules/cnr-ibba/samtools/coverage/main.nf b/modules/nf-core/samtools/coverage/main.nf → modules/cnr-ibba/samtools/coverage/main.nf
diff --git a/modules/nf-core/samtools/coverage/meta.yml → modules/cnr-ibba/samtools/coverage/meta.yml b/modules/nf-core/samtools/coverage/meta.yml → modules/cnr-ibba/samtools/coverage/meta.yml
diff --git a/...nf-core/samtools/flagstat/environment.yml → ...nr-ibba/samtools/flagstat/environment.yml b/...nf-core/samtools/flagstat/environment.yml → ...nr-ibba/samtools/flagstat/environment.yml
diff --git a/modules/nf-core/samtools/flagstat/main.nf → modules/cnr-ibba/samtools/flagstat/main.nf b/modules/nf-core/samtools/flagstat/main.nf → modules/cnr-ibba/samtools/flagstat/main.nf
diff --git a/modules/nf-core/samtools/flagstat/meta.yml → modules/cnr-ibba/samtools/flagstat/meta.yml b/modules/nf-core/samtools/flagstat/meta.yml → modules/cnr-ibba/samtools/flagstat/meta.yml
diff --git a/...nf-core/samtools/idxstats/environment.yml → ...nr-ibba/samtools/idxstats/environment.yml b/...nf-core/samtools/idxstats/environment.yml → ...nr-ibba/samtools/idxstats/environment.yml
diff --git a/modules/nf-core/samtools/idxstats/main.nf → modules/cnr-ibba/samtools/idxstats/main.nf b/modules/nf-core/samtools/idxstats/main.nf → modules/cnr-ibba/samtools/idxstats/main.nf
diff --git a/modules/nf-core/samtools/idxstats/meta.yml → modules/cnr-ibba/samtools/idxstats/meta.yml b/modules/nf-core/samtools/idxstats/meta.yml → modules/cnr-ibba/samtools/idxstats/meta.yml
diff --git a/...core/samtools/idxstats/tests/main.nf.test → ...ibba/samtools/idxstats/tests/main.nf.test b/...core/samtools/idxstats/tests/main.nf.test → ...ibba/samtools/idxstats/tests/main.nf.test
diff --git a/...samtools/idxstats/tests/main.nf.test.snap → ...samtools/idxstats/tests/main.nf.test.snap b/...samtools/idxstats/tests/main.nf.test.snap → ...samtools/idxstats/tests/main.nf.test.snap
diff --git a/.../nf-core/samtools/idxstats/tests/tags.yml → ...cnr-ibba/samtools/idxstats/tests/tags.yml b/.../nf-core/samtools/idxstats/tests/tags.yml → ...cnr-ibba/samtools/idxstats/tests/tags.yml
diff --git a/...es/nf-core/samtools/stats/environment.yml → ...s/cnr-ibba/samtools/stats/environment.yml b/...es/nf-core/samtools/stats/environment.yml → ...s/cnr-ibba/samtools/stats/environment.yml
diff --git a/modules/nf-core/samtools/stats/main.nf → modules/cnr-ibba/samtools/stats/main.nf b/modules/nf-core/samtools/stats/main.nf → modules/cnr-ibba/samtools/stats/main.nf
diff --git a/modules/nf-core/samtools/stats/meta.yml → modules/cnr-ibba/samtools/stats/meta.yml b/modules/nf-core/samtools/stats/meta.yml → modules/cnr-ibba/samtools/stats/meta.yml
diff --git a/modules/nf-core/tabix/tabix/environment.yml → modules/cnr-ibba/tabix/tabix/environment.yml b/modules/nf-core/tabix/tabix/environment.yml → modules/cnr-ibba/tabix/tabix/environment.yml
diff --git a/modules/nf-core/tabix/tabix/main.nf → modules/cnr-ibba/tabix/tabix/main.nf b/modules/nf-core/tabix/tabix/main.nf → modules/cnr-ibba/tabix/tabix/main.nf
diff --git a/modules/nf-core/tabix/tabix/meta.yml → modules/cnr-ibba/tabix/tabix/meta.yml b/modules/nf-core/tabix/tabix/meta.yml → modules/cnr-ibba/tabix/tabix/meta.yml
diff --git a/...kflows/nf-core/bam_stats_samtools/main.nf → ...flows/cnr-ibba/bam_stats_samtools/main.nf b/...kflows/nf-core/bam_stats_samtools/main.nf → ...flows/cnr-ibba/bam_stats_samtools/main.nf
diff --git a/...flows/nf-core/bam_stats_samtools/meta.yml → ...lows/cnr-ibba/bam_stats_samtools/meta.yml b/...flows/nf-core/bam_stats_samtools/meta.yml → ...lows/cnr-ibba/bam_stats_samtools/meta.yml
diff --git a/...ore/bam_stats_samtools/tests/main.nf.test → ...bba/bam_stats_samtools/tests/main.nf.test b/...ore/bam_stats_samtools/tests/main.nf.test → ...bba/bam_stats_samtools/tests/main.nf.test
diff --git a/...am_stats_samtools/tests/main.nf.test.snap → ...am_stats_samtools/tests/main.nf.test.snap b/...am_stats_samtools/tests/main.nf.test.snap → ...am_stats_samtools/tests/main.nf.test.snap
diff --git a/...nf-core/bam_stats_samtools/tests/tags.yml → ...nr-ibba/bam_stats_samtools/tests/tags.yml b/...nf-core/bam_stats_samtools/tests/tags.yml → ...nr-ibba/bam_stats_samtools/tests/tags.yml
diff --git a/...s/modules/nf-core/bcftools/concat/main.nf → .../modules/cnr-ibba/bcftools/concat/main.nf b/...s/modules/nf-core/bcftools/concat/main.nf → .../modules/cnr-ibba/bcftools/concat/main.nf
diff --git a/...s/nf-core/bcftools/concat/nextflow.config → .../cnr-ibba/bcftools/concat/nextflow.config b/...s/nf-core/bcftools/concat/nextflow.config → .../cnr-ibba/bcftools/concat/nextflow.config
diff --git a/.../modules/nf-core/bcftools/concat/test.yml → ...modules/cnr-ibba/bcftools/concat/test.yml b/.../modules/nf-core/bcftools/concat/test.yml → ...modules/cnr-ibba/bcftools/concat/test.yml
diff --git a/...modules/nf-core/samtools/coverage/main.nf → ...odules/cnr-ibba/samtools/coverage/main.nf b/...modules/nf-core/samtools/coverage/main.nf → ...odules/cnr-ibba/samtools/coverage/main.nf
diff --git a/...nf-core/samtools/coverage/nextflow.config → ...nr-ibba/samtools/coverage/nextflow.config b/...nf-core/samtools/coverage/nextflow.config → ...nr-ibba/samtools/coverage/nextflow.config
diff --git a/...odules/nf-core/samtools/coverage/test.yml → ...dules/cnr-ibba/samtools/coverage/test.yml b/...odules/nf-core/samtools/coverage/test.yml → ...dules/cnr-ibba/samtools/coverage/test.yml
diff --git a/...modules/nf-core/samtools/flagstat/main.nf → ...odules/cnr-ibba/samtools/flagstat/main.nf b/...modules/nf-core/samtools/flagstat/main.nf → ...odules/cnr-ibba/samtools/flagstat/main.nf
diff --git a/...nf-core/samtools/flagstat/nextflow.config → ...nr-ibba/samtools/flagstat/nextflow.config b/...nf-core/samtools/flagstat/nextflow.config → ...nr-ibba/samtools/flagstat/nextflow.config
diff --git a/...odules/nf-core/samtools/flagstat/test.yml → ...dules/cnr-ibba/samtools/flagstat/test.yml b/...odules/nf-core/samtools/flagstat/test.yml → ...dules/cnr-ibba/samtools/flagstat/test.yml
diff --git a/...modules/nf-core/samtools/idxstats/main.nf → ...odules/cnr-ibba/samtools/idxstats/main.nf b/...modules/nf-core/samtools/idxstats/main.nf → ...odules/cnr-ibba/samtools/idxstats/main.nf
diff --git a/...nf-core/samtools/idxstats/nextflow.config → ...nr-ibba/samtools/idxstats/nextflow.config b/...nf-core/samtools/idxstats/nextflow.config → ...nr-ibba/samtools/idxstats/nextflow.config
diff --git a/...odules/nf-core/samtools/idxstats/test.yml → ...dules/cnr-ibba/samtools/idxstats/test.yml b/...odules/nf-core/samtools/idxstats/test.yml → ...dules/cnr-ibba/samtools/idxstats/test.yml
diff --git a/tests/modules/nf-core/samtools/stats/main.nf → ...s/modules/cnr-ibba/samtools/stats/main.nf b/tests/modules/nf-core/samtools/stats/main.nf → ...s/modules/cnr-ibba/samtools/stats/main.nf
diff --git a/...es/nf-core/samtools/stats/nextflow.config → ...s/cnr-ibba/samtools/stats/nextflow.config b/...es/nf-core/samtools/stats/nextflow.config → ...s/cnr-ibba/samtools/stats/nextflow.config
diff --git a/...s/modules/nf-core/samtools/stats/test.yml → .../modules/cnr-ibba/samtools/stats/test.yml b/...s/modules/nf-core/samtools/stats/test.yml → .../modules/cnr-ibba/samtools/stats/test.yml
diff --git a/tests/modules/nf-core/tabix/tabix/main.nf → tests/modules/cnr-ibba/tabix/tabix/main.nf b/tests/modules/nf-core/tabix/tabix/main.nf → tests/modules/cnr-ibba/tabix/tabix/main.nf
diff --git a/...dules/nf-core/tabix/tabix/nextflow.config → ...ules/cnr-ibba/tabix/tabix/nextflow.config b/...dules/nf-core/tabix/tabix/nextflow.config → ...ules/cnr-ibba/tabix/tabix/nextflow.config
diff --git a/tests/modules/nf-core/tabix/tabix/test.yml → tests/modules/cnr-ibba/tabix/tabix/test.yml b/tests/modules/nf-core/tabix/tabix/test.yml → tests/modules/cnr-ibba/tabix/tabix/test.yml
diff --git a/...kflows/nf-core/bam_stats_samtools/main.nf → ...flows/cnr-ibba/bam_stats_samtools/main.nf b/...kflows/nf-core/bam_stats_samtools/main.nf → ...flows/cnr-ibba/bam_stats_samtools/main.nf
diff --git a/...f-core/bam_stats_samtools/nextflow.config → ...r-ibba/bam_stats_samtools/nextflow.config b/...f-core/bam_stats_samtools/nextflow.config → ...r-ibba/bam_stats_samtools/nextflow.config
diff --git a/...flows/nf-core/bam_stats_samtools/test.yml → ...lows/cnr-ibba/bam_stats_samtools/test.yml b/...flows/nf-core/bam_stats_samtools/test.yml → ...lows/cnr-ibba/bam_stats_samtools/test.yml