🐛 pristine modules organization folder #80
bunoppytest-workflow.yml
on: pull_request
Check for changes
4s
Matrix: test
Annotations
36 errors and 42 warnings
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samtools/idxstats docker
Process completed with exit code 1.
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samtools/idxstats docker
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samtools/stats docker
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samtools/stats docker
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samtools/idxstats conda
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samtools/idxstats conda
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samtools/flagstat docker
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samtools/flagstat docker
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samtools/coverage docker
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samtools/coverage docker
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bcftools/concat conda
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bcftools/concat conda
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samtools/flagstat conda
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samtools/flagstat conda
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bcftools/concat docker
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bcftools/concat docker
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samtools/coverage conda
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samtools/coverage conda
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samtools/stats conda
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samtools/stats conda
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tabix/tabix docker
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tabix/tabix docker
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samtools/flagstat singularity
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samtools/flagstat singularity
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tabix/tabix conda
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tabix/tabix conda
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samtools/idxstats singularity
Process completed with exit code 1.
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samtools/idxstats singularity
Process completed with exit code 4.
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samtools/stats singularity
Process completed with exit code 1.
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samtools/stats singularity
Process completed with exit code 4.
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samtools/coverage singularity
Process completed with exit code 1.
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samtools/coverage singularity
Process completed with exit code 4.
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bcftools/concat singularity
Process completed with exit code 1.
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bcftools/concat singularity
Process completed with exit code 4.
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tabix/tabix singularity
Process completed with exit code 1.
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tabix/tabix singularity
Process completed with exit code 4.
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samtools/idxstats docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/idxstats docker
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/stats docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/stats docker
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/idxstats conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/idxstats conda
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/flagstat docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/flagstat docker
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/coverage docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/coverage docker
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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bcftools/concat conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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bcftools/concat conda
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/flagstat conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/flagstat conda
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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bcftools/concat docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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bcftools/concat docker
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/coverage conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/coverage conda
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/stats conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/stats conda
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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tabix/tabix docker
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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tabix/tabix docker
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/flagstat singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v5, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/flagstat singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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samtools/flagstat singularity
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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tabix/tabix conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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tabix/tabix conda
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/idxstats singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v5, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/idxstats singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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samtools/idxstats singularity
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/stats singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v5, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/stats singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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samtools/stats singularity
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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samtools/coverage singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v5, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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samtools/coverage singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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samtools/coverage singularity
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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bcftools/concat singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v5, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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bcftools/concat singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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bcftools/concat singularity
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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tabix/tabix singularity
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-singularity@v5, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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tabix/tabix singularity
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v5. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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tabix/tabix singularity
No files were found with the provided path: /home/runner/pytest_workflow_*/*/.nextflow.log
/home/runner/pytest_workflow_*/*/log.out
/home/runner/pytest_workflow_*/*/log.err
/home/runner/pytest_workflow_*/*/work
!/home/runner/pytest_workflow_*/*/work/conda
!/home/runner/pytest_workflow_*/*/work/singularity. No artifacts will be uploaded.
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