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Create a Nextflow module for Nucmer #78

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jimmyliu1326 opened this issue Nov 20, 2024 · 2 comments
Open
1 of 2 tasks

Create a Nextflow module for Nucmer #78

jimmyliu1326 opened this issue Nov 20, 2024 · 2 comments
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@azmigueldario
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enhancement New feature or request

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@jimmyliu1326
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jimmyliu1326 commented Nov 20, 2024 •
edited by azmigueldario
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Description of feature

  • Install module from nf-core
  • Test module
@jimmyliu1326 jimmyliu1326 added the enhancement New feature or request label Nov 20, 2024
@azmigueldario azmigueldario self-assigned this Nov 20, 2024
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Imported from nf-core and tested locally

@jimmyliu1326
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Reopening this, as we want to output the alignment in SAM format to produce standardized outputs from each variant caller. Nucmer can produce SAM outputs by supplying the --sam-long flag

For more details see here

@jimmyliu1326 jimmyliu1326 reopened this Dec 2, 2024
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