Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add Rolfs 2021 halflife data to protac bucket 7 #6

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

louwenjjr
Copy link

@louwenjjr louwenjjr commented Jul 22, 2024

Hi team, we would like to add protein halflife data from Rolfs 2021 to the tractability table in Open Targets. We therefore added some datafiles from the Rolfs 2021 study and added some code to the PROTAC bucket 7 function. Let us know if this is the best way to go about it, and of course any feedback on the code. We also started an issue at the Open Targets issue board to center communication on this.

Rolfs 2021 data statistics:

  • halflife values for 3005 targets across 8 tissues
  • 11 mouse uniprot ids could not be mapped with MGI mapping
  • 2157 targets shared with Mathieson 2018
  • 836 new targets with halflife data

If Targets are measured in multiple tissues, halflife values are joined by taking the min for the Min_halflife value and max for the Max_halflife value

Rolfs 2021 data statistics:
- halflife values for 3005 targets across 8 tissues
- 11 mouse uniprot ids could not be mapped with MGI mapping
- 2157 targets shared with Mathieson 2018
- 836 new targets with halflife data

If Targets are measured in multiple tissues, halflife values are joined by
taking the min for the Min_halflife value and max for the Max_halflife value
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant