Skip to content

Issues: chasewnelson/SNPGenie

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 48 Closed
28 Open 48 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Questions about the principle of computation
#78 opened Nov 19, 2024 by YangJingqii
7
Conflicting SNP Report formats detected.
#75 opened Sep 11, 2024 by bturne48
11
problem with minfreq
#74 opened Feb 12, 2024 by wantingwei
5
No snps problems
#71 opened Jul 11, 2023 by NiklausMikaelson12138
4
VCF has no header
#70 opened Jul 7, 2023 by NiklausMikaelson12138
Using SNPGenie on VCF from RAD-seq
#68 opened Apr 20, 2023 by AudeCaizergues
1
Need help to determine method for inference of convergent evolution
#66 opened Jan 30, 2023 by qianxuans
1
GTF file does not contain any sense (+) strand products
#65 opened Oct 3, 2022 by dferran1
12
How to join the output for a whole genome analysis
#64 opened Sep 26, 2022 by pabloangulo7
5
SNP genie
#59 opened May 7, 2022 by Ravy-LFL
What is the best option?
#57 opened Apr 8, 2022 by glaudelrio
1
Negative values for mean_gdiv_polymorphic
#56 opened Feb 4, 2022 by peterdfields
1
triplet error for spliced proteins
#55 opened Aug 30, 2021 by hrrsjeong
2
unsure how SNPgenie does the polarization of mutations
#54 opened Aug 9, 2021 by mufernando
1
sliding_window script requires different headers than between_group output file generates
#52 opened May 24, 2021 by passdan
4
NONREF_NONPOLY and population_summary.txt empty
#51 opened May 19, 2021 by nicolo-tellini
2
pi cluster within-pool
#50 opened May 13, 2021 by aspitaleri
11
Question about calculating pi within a window
#48 opened May 10, 2021 by deborahmleigh
21
gtf -strand convert to + strand
#45 opened Apr 22, 2021 by zlc289
2
analysing within-host diversity
#44 opened Mar 12, 2021 by aspitaleri
12
WARNING: AD must list numbers
#42 opened Feb 15, 2021 by ireneIta
6
mid-sequence STOP codon in the sequence
#41 opened Jan 2, 2021 by jsan4christ
1
SNPgenie for one bacterial strain
#40 opened Nov 9, 2020 by SolayMane
1
Advice on multi-sample, multi-species, multi-contig analyses for both πN/πS and dN/dS
#39 opened Aug 16, 2020 by andreaswallberg
4
specify genetic code?
#38 opened Aug 11, 2020 by nathanerank
3
ProTip! Adding no:label will show everything without a label.