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Added bcftools +split and sharded shapeit4 by small regions #47

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Added bcftools +split and sharded shapeit4 by small regions #47

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Commits on Sep 6, 2024

  1. Revised Hiphase whole genome

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    hangsuUNC committed Sep 6, 2024
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Commits on Sep 9, 2024

  1. added whole-genome hiphase

    @hangsuUNC
    hangsuUNC committed Sep 9, 2024
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  2. added Shapeit4 Sharding

    @hangsuUNC
    hangsuUNC committed Sep 9, 2024
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  3. add bcftools index

    @hangsuUNC
    hangsuUNC committed Sep 9, 2024
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  4. add bcftools index

    @hangsuUNC
    hangsuUNC committed Sep 9, 2024
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  5. add for loop for bcftools index

    @hangsuUNC
    hangsuUNC committed Sep 9, 2024
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  6. bubble up PhasedPanelEvaluation

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    hangsuUNC committed Sep 9, 2024
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Commits on Sep 10, 2024

  1. revise helper parameters

    @hangsuUNC
    hangsuUNC committed Sep 10, 2024
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  2. SplitVCF

    @hangsuUNC
    hangsuUNC committed Sep 10, 2024
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  3. add Find Match

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    hangsuUNC committed Sep 10, 2024
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  4. add outputnames

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    hangsuUNC committed Sep 10, 2024
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  5. add runtime attributes

    @hangsuUNC
    hangsuUNC committed Sep 10, 2024
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  6. revise script

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    hangsuUNC committed Sep 10, 2024
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  7. revise script

    @hangsuUNC
    hangsuUNC committed Sep 10, 2024
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  8. add FindMatch

    @hangsuUNC
    hangsuUNC committed Sep 10, 2024
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  9. add Array

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    hangsuUNC committed Sep 10, 2024
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  10. cohesive the input array

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    hangsuUNC committed Sep 10, 2024
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  11. add files

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    hangsuUNC committed Sep 10, 2024
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Commits on Sep 11, 2024

  1. revise process_vcf

    @hangsuUNC
    hangsuUNC committed Sep 11, 2024
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  2. test awk

    @hangsuUNC
    hangsuUNC committed Sep 11, 2024
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  3. 0-based index

    @hangsuUNC
    hangsuUNC committed Sep 11, 2024
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  4. move ConvertLowerCase

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    hangsuUNC committed Sep 11, 2024
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  5. add subset vcfs

    @hangsuUNC
    hangsuUNC committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. add subset Bam

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    hangsuUNC committed Sep 12, 2024
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Commits on Sep 20, 2024

  1. revise disk size

    @hangsuUNC
    hangsuUNC committed Sep 20, 2024
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Commits on Sep 25, 2024

  1. remove for loop indexing bcftools splitted vcfs

    @hangsuUNC
    hangsuUNC committed Sep 25, 2024
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  2. changed vcf.gz to bcf format

    @hangsuUNC
    hangsuUNC committed Sep 25, 2024
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  3. add workdirectory, fix small bugs

    @hangsuUNC
    hangsuUNC committed Sep 25, 2024
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  4. fix hiphase input

    @hangsuUNC
    hangsuUNC committed Sep 25, 2024
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  5. fix bugs in mergevcf

    @hangsuUNC
    hangsuUNC committed Sep 25, 2024
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  6. fix filterandconcat bugs

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    hangsuUNC committed Sep 25, 2024
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Commits on Sep 26, 2024

  1. change Mergevcf input

    @hangsuUNC
    hangsuUNC committed Sep 26, 2024
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  2. hierarchical merge v1

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    hangsuUNC committed Sep 26, 2024
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  3. hierarchical merging bubble up

    @hangsuUNC
    hangsuUNC committed Sep 26, 2024
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  4. hierarchical merging force single

    @hangsuUNC
    hangsuUNC committed Sep 26, 2024
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Commits on Oct 1, 2024

  1. revise Helper, Physicalandstatisticalphasing

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    hangsuUNC committed Oct 1, 2024
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