Code

🔖 release v0.9.7#28

Code

Open

filippob wants to merge 31 commits intomasterbioinformatics-ptp/detectRUNS:masterfrom develbioinformatics-ptp/detectRUNS:develCopy head branch name to clipboard

+668-244

Commits

Commits on Jan 5, 2022

• updating the function tableRuns

  Show description for 25e8677
  filippob

  committed
  25e8677

• updating help of the function tableRuns

  filippob

  committed
  4c93dc4

Commits on Mar 22, 2022

• 🔀 Merge branch 'master' into devel

  bunop

  committed
  1f821bc

Commits on Mar 28, 2022

• ✅ test tableRuns

  bunop

  committed
  7c6bd2d

• 🔥 remove SnpInRuns from tableRuns parameters

  Show description for 0362a33
  bunop

  committed
  0362a33

• ⚡ calculate tableRuns by chrom

  bunop

  committed
  9c74576

Commits on Mar 29, 2022

• 👷 attempt to fix coverage visualization

  bunop

  committed
  99cccaa

• 🐛 change tableRUNS threshold

  Show description for 0a7a24b
  bunop

  committed
  0a7a24b

Commits on Mar 30, 2022

• 🐛 fix bug in tableRuns

  Show description for a6e37d4
  bunop

  committed
  a6e37d4

• 🐛 fix bug in tableRuns filtering

  Show description for 437619e
  bunop

  committed
  437619e

Commits on Apr 4, 2022

• ✨ start implementing tableRuns with Rcpp

  bunop

  committed
  ca3d31e

• ✨ implement tableRuns in cpp

  bunop

  committed
  7db05eb

• ✅ test tableRunsCpp

  bunop

  committed
  2ca0e5a

• 🐛 skip tableRuns when no data available

  bunop

  committed
  3c7d235

• ♻️ refactor snpInsideRunsCpp internal variables

  Show description for c78177a
  bunop

  committed
  c78177a

Commits on Apr 5, 2022

• ♻️ filter tableRuns by threshold before evaluating breeds

  bunop

  committed
  677fcad

• 🧐 evaluate tableRuns performance in Cpp and R

  bunop

  committed
  84eb6e6

• 💩 duplicate snpInsideRunsCpp to ensure backward compatibility

  bunop

  committed
  d05ef4d

• ⚡ no more pre-allocate memory in countSnpInRunsCpp

  bunop

  committed
  ef971b6

• ⏪ revert countSnpInRunsCpp related code

  bunop

  committed
  8d081e3

• ♻️ add Number column to snpInsideRunsCpp result

  bunop

  committed
  43614e6

• 🔥 remove tableRuns form R code

  bunop

  committed
  ab4d958

Commits on Apr 21, 2022

• ⚡ calculate pops outside snpInsideRunsCpp

  bunop

  committed
  0082c30

• 💩 attempt to fix performance scripts - not working

  bunop

  committed
  52abad1

Commits on Apr 22, 2022

• 🐛 fixed test1 performance test script

  bunop

  committed
  496642c

Commits on Apr 27, 2022

• 🐛 check threshold value in tableRun

  bunop

  committed
  856c488

Commits on Apr 28, 2023

• 👽 set guides(fill="none") in plot_InbreedingChr and plot_DistributionRuns

  Show description for 79b04a6
  bunop

  committed
  79b04a6

Commits on May 9, 2023

• Merge pull request #40 from bioinformatics-ptp/issue-39

  Show description for 466f55a
  filippob

  authored
  466f55a

• Merge branch 'devel' into issue-31

  filippob

  authored
  6503f49

• Merge pull request #32 from bioinformatics-ptp/issue-31

  Show description for a35f7a3
  filippob

  authored
  a35f7a3

• Updated documentation and vignette

  Show description for 567859e
  filippob

  committed
  567859e