-
Notifications
You must be signed in to change notification settings - Fork 3
9 References and Disclaimer
#REFERENCES
Alexander, D.H., and K. Lange. 2011. Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics. 12:246. doi:10.1186/1471-2105-12-246.
Browning, B.L., and S.R. Browning. 2009. A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am. J. Hum. Genet. 84:210–23. doi:10.1016/j.ajhg.2009.01.005.
Browning, S.R., and B.L. Browning. 2007. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81:1084–97. doi:10.1086/521987.
Chang, C.C., C.C. Chow, L.C. Tellier, S. Vattikuti, S.M. Purcell, and J.J. Lee. 2015. Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience. 4:7. doi:10.1186/s13742-015-0047-8.
Marras, G., G. Gaspa, S. Sorbolini, C. Dimauro, P. Ajmone-Marsan, A. Valentini, J.L. Williams, and N.P.P. Macciotta. 2015. Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy. Anim. Genet. 46:110–21. doi:10.1111/age.12259.
Nicolazzi, E.L., A. Caprera, N. Nazzicari, P. Cozzi, F. Strozzi, C. Lawley, A. Pirani, C. Soans, F. Brew, H. Jorjani, G. Evans, B. Simpson, G. Tosser-Klopp, R. Brauning, J.L. Williams, and A. Stella. 2015. SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species. BMC Genomics. 16:1–6. doi:10.1186/s12864-015-1497-1.
Nicolazzi, E.L., D. Iamartino, and J.L. Williams. 2014. AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow. Bioinformatics. btu486–.
Roshyara, N.R., and M. Scholz. 2014. fcGENE: a versatile tool for processing and transforming SNP datasets. PLoS One. 9:e97589. doi:10.1371/journal.pone.0097589.
Sargolzaei, M., J.P. Chesnais, and F.S. Schenkel. 2014. A new approach for efficient genotype imputation using information from relatives. BMC Genomics. 15:478. doi:10.1186/1471-2164-15-478.
Zanardi is a free tool that uses proprietary software that is publicly available online: you can redistribute our pipeline and/or modify this program, but at your own risk. Zanardi is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY r FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details: http://www.gnu.org/licenses/. This pipeline is for research and has not a commercial intent, but it can be freely used by any organization. Our only goal is to help people streamline their work. Alessandro (Alex) Zanardi was not involved in anything related to this pipeline. We just named this tool after him as a tribute to a great man with an inspiring life. Alex Zanardi nor his foundation, however, are responsible of any aspect regarding this pipeline. Some of the authors of this tool were funded by the Gene2farm, ClimGen and GenHome projects, which was financed with support from the European Commission or the Italian Government. However, the European Commission, the Italian Government nor the partners of the projects involved can be held responsible for any information contained in this website. The authors of this pipeline are not responsible for ANY output, modification or result obtained from it. For bug report, feedback and questions (PLEASE read the carefully this manual before sending your question) contact: [email protected] or [email protected].