update modules

UA-SRC-data · Jan 1, 2022 · 9b0906d · 9b0906d
1 parent 746ab28
commit 9b0906d
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Showing 4 changed files with 52 additions and 54 deletions.
diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
@@ -1,48 +1,38 @@
 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
 <catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
-<group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public" xml:base="">
-
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/bco_import.owl" uri="imports/bco_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/bco_import.obo" uri="imports/bco_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/chebi_import.owl" uri="imports/chebi_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/chebi_import.obo" uri="imports/chebi_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/envo_import.owl" uri="imports/envo_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/envo_import.obo" uri="imports/envo_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/exo_import.owl" uri="imports/exo_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/exo_import.obo" uri="imports/exo_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/iao_import.owl" uri="imports/iao_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/iao_import.obo" uri="imports/iao_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/omrse_import.owl" uri="imports/omrse_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/omrse_import.obo" uri="imports/omrse_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pato_import.owl" uri="imports/pato_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pato_import.obo" uri="imports/pato_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pco_import.owl" uri="imports/pco_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pco_import.obo" uri="imports/pco_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/po_import.owl" uri="imports/po_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/po_import.obo" uri="imports/po_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/ro_import.owl" uri="imports/ro_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/ro_import.obo" uri="imports/ro_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/stato_import.owl" uri="imports/stato_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/stato_import.obo" uri="imports/stato_import.obo"/>
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/uo_import.owl" uri="imports/uo_import.owl"/>
-  <uri name="http://purl.obolibrary.org/obo/srpdio/imports/uo_import.obo" uri="imports/uo_import.obo"/>
-
-
-
-
-
-  <uri name="http://purl.obolibrary.org/obo/srpdio/patterns/definitions.owl" uri="../patterns/definitions.owl"/>
-</group>
-</catalog>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/modules/all_acs5.owl" uri="modules/all_acs5.owl"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/modules/se_categorical_qualities.owl" uri="modules/se_categorical_qualities.owl"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/modules/se_data_classes.owl" uri="modules/se_data_classes.owl"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/modules/SRPDIO_internal_vocab.owl" uri="modules/SRPDIO_internal_vocab.owl"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/plant_part_concentration.owl" uri="modules/plant_part_concentration.owl"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/data_item_about.owl" uri="modules/data_item_about.owl"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/entity_attribute.owl" uri="modules/entity_attribute.owl"/>
+    <uri id="Imports Wizard Entry" name="http://purl.obolibrary.org/obo/srpdio/chemical_concentration.owl" uri="modules/chemical_concentration.owl"/>
+    <group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public" xml:base="">
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/bco_import.owl" uri="imports/bco_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/bco_import.obo" uri="imports/bco_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/chebi_import.owl" uri="imports/chebi_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/chebi_import.obo" uri="imports/chebi_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/envo_import.owl" uri="imports/envo_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/envo_import.obo" uri="imports/envo_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/exo_import.owl" uri="imports/exo_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/exo_import.obo" uri="imports/exo_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/iao_import.owl" uri="imports/iao_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/iao_import.obo" uri="imports/iao_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/omrse_import.owl" uri="imports/omrse_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/omrse_import.obo" uri="imports/omrse_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pato_import.owl" uri="imports/pato_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pato_import.obo" uri="imports/pato_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pco_import.owl" uri="imports/pco_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/pco_import.obo" uri="imports/pco_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/po_import.owl" uri="imports/po_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/po_import.obo" uri="imports/po_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/ro_import.owl" uri="imports/ro_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/ro_import.obo" uri="imports/ro_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/stato_import.owl" uri="imports/stato_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/stato_import.obo" uri="imports/stato_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/uo_import.owl" uri="imports/uo_import.owl"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/imports/uo_import.obo" uri="imports/uo_import.obo"/>
+        <uri name="http://purl.obolibrary.org/obo/srpdio/patterns/definitions.owl" uri="../patterns/definitions.owl"/>
+    </group>
+</catalog>
diff --git a/src/ontology/modules/SRPDIO_internal_vocab.owl b/src/ontology/modules/SRPDIO_internal_vocab.owl
@@ -170,9 +170,9 @@
 
 
 
-    <!-- http://purl.obolibrary.org/obo/SRPDIO_1000217 -->
+    <!-- http://purl.obolibrary.org/obo/SRPDIO_2020217 -->
 
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/SRPDIO_1000217"/>
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/SRPDIO_2020217"/>
 
 
 
@@ -228,7 +228,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/SRPDIO_1000217"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/SRPDIO_2020217"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <obo:IAO_0000115 xml:lang="en">The ratio of sodium to calcium plus magnesium in water. [(Na)/(sq root of 1/2 Ca + Mg)]. Used as a way to determine if sodium concentration is likely to impact soil properties.</obo:IAO_0000115>
@@ -251,7 +251,7 @@
         <rdfs:subClassOf>
             <owl:Restriction>
                 <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
-                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/SRPDIO_1000217"/>
+                <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/SRPDIO_2020217"/>
             </owl:Restriction>
         </rdfs:subClassOf>
         <obo:IAO_0000115 xml:lang="en">The percent total cations in water that are sodium</obo:IAO_0000115>

diff --git a/src/ontology/modules/chemical_concentration.owl b/src/ontology/modules/chemical_concentration.owl
@@ -9365,7 +9365,7 @@
                                     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/CHEBI_155869"/>
                                     <owl:Restriction>
                                         <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/>
-                                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/ENVO_00002011"/>
+                                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/SRPDIO_4000007"/>
                                     </owl:Restriction>
                                 </owl:intersectionOf>
                             </owl:Class>
@@ -9374,9 +9374,9 @@
                 </owl:intersectionOf>
             </owl:Class>
         </owl:equivalentClass>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The concentration of elemental scandium when measured in fresh water.</obo:IAO_0000115>
-        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">fresh water elemental scandium concentration</oboInOwl:hasExactSynonym>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">concentration of elemental scandium in fresh water</rdfs:label>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The concentration of elemental scandium when measured in topsoil.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">topsoil elemental scandium concentration</oboInOwl:hasExactSynonym>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">concentration of elemental scandium in topsoil</rdfs:label>
     </owl:Class>
 
 

diff --git a/src/ontology/srpdio-edit.owl b/src/ontology/srpdio-edit.owl
@@ -9,6 +9,10 @@ Prefix(dcterms:=<http://purl.org/dc/terms/>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/srpdio.owl>
+Import(<http://purl.obolibrary.org/obo/srpdio/chemical_concentration.owl>)
+Import(<http://purl.obolibrary.org/obo/srpdio/data_item_about.owl>)
+Import(<http://purl.obolibrary.org/obo/srpdio/entity_attribute.owl>)
+Import(<http://purl.obolibrary.org/obo/srpdio/plant_part_concentration.owl>)
 Import(<http://purl.obolibrary.org/obo/srpdio/imports/bco_import.owl>)
 Import(<http://purl.obolibrary.org/obo/srpdio/imports/chebi_import.owl>)
 Import(<http://purl.obolibrary.org/obo/srpdio/imports/envo_import.owl>)
@@ -21,6 +25,10 @@ Import(<http://purl.obolibrary.org/obo/srpdio/imports/po_import.owl>)
 Import(<http://purl.obolibrary.org/obo/srpdio/imports/ro_import.owl>)
 Import(<http://purl.obolibrary.org/obo/srpdio/imports/stato_import.owl>)
 Import(<http://purl.obolibrary.org/obo/srpdio/imports/uo_import.owl>)
+Import(<http://purl.obolibrary.org/obo/srpdio/modules/SRPDIO_internal_vocab.owl>)
+Import(<http://purl.obolibrary.org/obo/srpdio/modules/all_acs5.owl>)
+Import(<http://purl.obolibrary.org/obo/srpdio/modules/se_categorical_qualities.owl>)
+Import(<http://purl.obolibrary.org/obo/srpdio/modules/se_data_classes.owl>)
 Annotation(dce:description "An ontology for use with the NIEHS Superfund Research Project.")
 Annotation(dce:title "Superfund Research Project Data Integration Ontology")
 Annotation(dcterms:license <CC-BY>)