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Update README.md
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Shixiang Wang (王诗翔) committed May 20, 2024
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Expand Up @@ -44,7 +44,7 @@ We have provided generated reference files above, but sometimes you may want to

The reference files are required in ASCAT for copy number calling.

- [Curated reference files for WES](https://github.com/VanLoo-lab/ascat/tree/master/ReferenceFiles/WES)
- [Curated reference files used by the latest ASCAT v3 for WES](https://github.com/VanLoo-lab/ascat/tree/master/ReferenceFiles/WES)

> The prediction model was built with data on the top of hg38 genome build, so
hg38-based BAM file input is more recommended.
Expand All @@ -64,7 +64,7 @@ remotes::install_github("ShixiangWang/ascat@v3-for-gcap-v1", subdir = "ASCAT")

**Reference files**:

- [Curated reference files for WES](https://zenodo.org/records/6364977)
- [Curated reference files used by the fixed version of ASCAT v3 for WES](https://zenodo.org/records/11219112)

### Alternatives to ASCAT

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