remove typo #206
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# Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
name: shiny-deploy | |
on: | |
# on push to branches labeled main and dev* or commits tagged as VYY.MM.n deploy | |
push: | |
branches: | |
- main | |
- dev* | |
tags: | |
- v[0-9]+.[0-9]+.[0-9]+ | |
paths-ignore: | |
- '.github/ISSUE_TEMPLATE/**' | |
- '**/*.md' | |
- '**/.gitignore' | |
jobs: | |
shiny-deploy: | |
runs-on: ubuntu-latest | |
container: rocker/rstudio:4.1.2 | |
env: | |
SCHEMATIC_URL_DEV: https://schematic-dev.api.sagebionetworks.org | |
SCHEMATIC_URL_STAGING: https://schematic-staging.api.sagebionetworks.org | |
SCHEMATIC_URL_PROD: https://schematic.api.sagebionetworks.org | |
# This should not be necessary for installing from public repo's however remotes::install_github() fails without it. | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Install System Dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install -y pip libcurl4-openssl-dev libpng-dev libfontconfig1-dev libharfbuzz-dev libfribidi-dev libtiff-dev libxml2-dev | |
# this action checks out the $GITHUB_WORKSPACE repository so that the workflow can access it | |
- uses: actions/checkout@v3 | |
# this action sets up pandoc | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
r-version: 'renv' | |
# install packages | |
- name: Install rsconnect | |
run: | | |
install.packages("renv") | |
renv::upgrade(version = "0.17.3") | |
renv::install("[email protected]") | |
shell: Rscript {0} | |
# this action activates renv | |
- uses: r-lib/actions/setup-renv@v2 | |
- name: Write R environmental variables | |
shell: bash | |
run: | | |
echo 'DFA_CLIENT_ID="${{ secrets.OAUTH_CLIENT_ID }}"' >> .Renviron | |
echo 'DFA_CLIENT_SECRET="${{ secrets.OAUTH_CLIENT_SECRET }}"' >> .Renviron | |
echo 'DFA_DCC_CONFIG="https://raw.githubusercontent.com/Sage-Bionetworks/data_flow_config/main/dcc_config.csv"' >> .Renviron | |
echo 'GITHUB_PAT="${{ secrets.GITHUB_TOKEN }}"' >> .Renviron | |
# deploy app using rsconnect | |
- name: Authorize and deploy app | |
run: | | |
renv::restore(packages = "renv") | |
# set variables | |
refName <- Sys.getenv("GITHUB_REF_NAME") | |
repo <- Sys.getenv("GITHUB_REPOSITORY") | |
appName <- strsplit(repo, "/")[[1]][2] | |
rsConnectUser <-"${{ secrets.RSCONNECT_USER }}" | |
rsConnectToken <- "${{ secrets.RSCONNECT_TOKEN }}" | |
rsConnectSecret <- "${{ secrets.RSCONNECT_SECRET }}" | |
# read in .Renviron | |
renviron <- readLines(".Renviron") | |
# if tag is v*.*.*, deploy to prod | |
# if main to staging | |
# otherwise to test | |
if (grepl("v[0-9]+.[0-9]+.[0-9]+", refName)) { | |
message("Deploying release version of app using schematic API production instance") | |
renviron <- c(renviron, "DFA_SCHEMATIC_API_URL = '${{ env.SCHEMATIC_URL_PROD }}'") | |
} else if (refName == "main") { | |
appName <- paste(appName, "staging", sep = "-") | |
renviron <- c(renviron, "DFA_SCHEMATIC_API_URL = '${{ env.SCHEMATIC_URL_STAGING }}'") | |
message("Deploying staging version of app using schematic API staging instance") | |
} else { | |
appName <- paste(appName, "testing", sep = "-") | |
renviron <- c(renviron, "DFA_SCHEMATIC_API_URL = '${{ env.SCHEMATIC_URL_DEV }}'") | |
message("Deploying testing version of app using schematic API dev instance") | |
} | |
# add oauth configuration to .renviron | |
appUrl <- sprintf("https://%s.shinyapps.io/%s", rsConnectUser, appName) | |
renviron <- c(renviron, sprintf("DFA_APP_URL=%s", appUrl)) | |
# write .Renviron | |
writeLines(renviron, ".Renviron") | |
# deploy | |
message(sprintf("Deploying to %s instance.", appName)) | |
# set account info | |
rsconnect::setAccountInfo(rsConnectUser, rsConnectToken, rsConnectSecret) | |
# get app names. If app exists, configure then deploy. Otherwise | |
# deploy then configure. | |
apps <- rsconnect::applications()$name | |
if (appName %in% apps) { | |
rsconnect::configureApp(appName = appName, size = "xxxlarge", logLevel = "verbose") | |
rsconnect::deployApp(appName = appName) | |
} else { | |
rsconnect::deployApp(appName = appName) | |
rsconnect::configureApp(appName = appName, size = "xxxlarge", logLevel = "verbose") | |
} | |
shell: Rscript {0} |