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update documents and comments.
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tanliwei-genomics-cn committed Jul 11, 2023
1 parent 9b2e9c9 commit 655d934
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2 changes: 1 addition & 1 deletion docs/source/content/06_Release_notes.rst
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Expand Up @@ -4,7 +4,7 @@ Release Notes
.. role:: small

Version 0.13.0b1 (Bata)
---------------------
------------------------
0.13.0b1 : 2023-07-11
~~~~~~~~~~~~~~~~~~~~~~~~
Notice: this Beta version is specifically developed for multi-sample analysis. Major update points are listed below.
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2 changes: 1 addition & 1 deletion docs/source/index.rst
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Expand Up @@ -74,7 +74,7 @@ Latest Additions
------------------

Version 0.13.0b1 (Beta)
~~~~~~~~~~~~~~
~~~~~~~~~~~~~~~~~~~~~~~~~
0.13.0b1 : 2023-07-11

Notice: this Beta version is specifically developed for multi-sample analysis. Major update points are listed below.
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6 changes: 3 additions & 3 deletions stereo/algorithm/regulatory_network_inference/plot_grn.py
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Expand Up @@ -363,14 +363,14 @@ def spatial_scatter_by_regulon_3D(
view_horizontal: int=0,
show_axis: bool=False,
**kwargs):
"""
Plot genes of one regulon on a 3D map
"""Plot genes of one regulon on a 3D map
:param network_res_key: the key which specifies inference regulatory network result in data.tl.result, defaults to 'regulatory_network_inference'
:param reg_name: specify the regulon you want to draw, defaults to None, if none, will select randomly.
:param fn: specify the file name of the output figure, defaults to None, if none, will use regulon name.
:param view_vertical: vertical angle to view to the 3D object
:param view_horizontal: horizontal angle to view the 3D object
:return:
Example:
data.plt.plot_3d_reg('regulatory_network_inference', 'Zfp354c', view_vertical=30, view_horizontal=-30)
"""
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