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318 Open 770 Closed
318 Open 770 Closed
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Issues list

Exclude terms from cell-level characteristics when suggesting terms for completion gui Issues or pull requests involving the Web UI low priority single cell Issues related to single-cell data support
#1304 opened Dec 12, 2024 by arteymix
@arteymix
Some series files from GEO FTP server have invalid UTF-8 characters bug low priority
#1303 opened Dec 10, 2024 by arteymix
1
Improve display of Statements on EE pages to avoid showing isolated free text bits like "1 mM". bug gui Issues or pull requests involving the Web UI
#1302 opened Dec 4, 2024 by ppavlidis
"Needs attention" remains unchecked low priority
#1301 opened Dec 3, 2024 by xnrxng
ConcurrentModificationException when altering ACLs bug needs confirmation Issues that need to be confirmed or reliably reproduced
#1299 opened Dec 3, 2024 by arteymix
@arteymix
column sorting in DE visualizations can be wrong bug gui Issues or pull requests involving the Web UI
#1296 opened Nov 26, 2024 by ppavlidis
1
Automation of "subset" tag low priority
#1294 opened Nov 21, 2024 by xnrxng
8
Differential expression with single cell data high priority Issues that require immediate attention single cell Issues related to single-cell data support
#1293 opened Nov 21, 2024 by arteymix
@arteymix
1
Tag subsets with a copy of the factor value's characteristics when subsetting enhancement Enhance the code or user experience low priority
#1292 opened Nov 15, 2024 by arteymix
1
eBayes fails on dataset bug
#1291 opened Nov 14, 2024 by ppavlidis
Make selection of arbitirary baselines for DEA deterministic and/or add more rules. enhancement Enhance the code or user experience
#1290 opened Nov 14, 2024 by ppavlidis
6
Filter cells to be included in a pseudo-bulk low priority single cell Issues related to single-cell data support
#1287 opened Nov 5, 2024 by arteymix
Provide auto-completion for enumerated options cli Issues affecting the CLI enhancement Enhance the code or user experience low priority
#1285 opened Nov 1, 2024 by arteymix
Restore/improve support for non-GEO dataset upload (esp. single-cell) enhancement Enhance the code or user experience
#1284 opened Nov 1, 2024 by ppavlidis
@arteymix
1
Show pubpeer plugin results on experiment pages with publications enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI low priority
#1283 opened Nov 1, 2024 by ppavlidis 1.31.13
3
Dataset searches from home page yielding a single experiment should navigate directly there enhancement Enhance the code or user experience gui Issues or pull requests involving the Web UI minor
#1282 opened Nov 1, 2024 by ppavlidis
Support writing data matrices with target scale type without generating new vectors cli Issues affecting the CLI enhancement Enhance the code or user experience single cell Issues related to single-cell data support
#1281 opened Oct 31, 2024 by arteymix
@arteymix
3
Always generate a count QT if possible enhancement Enhance the code or user experience low priority single cell Issues related to single-cell data support
#1280 opened Oct 31, 2024 by arteymix
@arteymix
2
Filter which subsets are retained when generating pseudo-bulks enhancement Enhance the code or user experience single cell Issues related to single-cell data support
#1279 opened Oct 31, 2024 by arteymix
@ppavlidis @arteymix @rachadele
1
Expose EE subsets in the REST API rest-api Issues or pull requests involving the RESTful API single cell Issues related to single-cell data support
#1277 opened Oct 31, 2024 by arteymix
5 tasks
Update maven-site-plugin to 3.21 enhancement Enhance the code or user experience low priority
#1275 opened Oct 30, 2024 by arteymix 1.32.0
1
Keep track of the number of cells with at least one expressed gene in samples and pseudo-bulks single cell Issues related to single-cell data support
#1273 opened Oct 28, 2024 by arteymix
3 tasks
@arteymix
4
Use 200 instead of "default" as a response code in docs enhancement Enhance the code or user experience minor rest-api Issues or pull requests involving the RESTful API
#1272 opened Oct 28, 2024 by arteymix
@arteymix
Add a /datasets/{dataset}/quantitationTypes/{quantitationType} endpoint enhancement Enhance the code or user experience rest-api Issues or pull requests involving the RESTful API
#1271 opened Oct 28, 2024 by arteymix
@arteymix
User interface requirements for single-cell gui Issues or pull requests involving the Web UI single cell Issues related to single-cell data support
#1270 opened Oct 25, 2024 by arteymix
5 of 8 tasks
2
@arteymix
1
ProTip! Adding no:label will show everything without a label.