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Update OBO foundry metadata #2658

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Dec 2, 2024
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Update OBO foundry metadata #2658

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23 changes: 13 additions & 10 deletions _config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -3803,32 +3803,36 @@ ontologies:
ontology_purl: http://purl.obolibrary.org/obo/mondo.owl
preferredPrefix: MONDO
products:
- description: Complete ontology. Uses MONDO IDs. Imports merged. The original mondo.owl
without merged imports and with equivalence axioms can now be obtained from
the release pages and is called mondo-with-equivalents.
- description: Complete ontology with merged imports.
format: owl-rdf/xml
id: mondo.owl
is_canonical: true
ontology_purl: http://purl.obolibrary.org/obo/mondo.owl
title: Main OWL edition
title: Mondo OWL edition
- derived_from: mondo.owl
description: As OWL. xrefs can be used as proxy for equivalence. Uses Mondo IDs.
description: OBO serialization of mondo.owl.
format: obo
id: mondo.obo
ontology_purl: http://purl.obolibrary.org/obo/mondo.obo
title: obo-format edition
title: Mondo OBO Format edition
- derived_from: mondo.owl
description: Equivalent to the OWL edition.
description: Obographs serialization of mondo.owl.
format: obo
id: mondo.json
ontology_purl: http://purl.obolibrary.org/obo/mondo.json
title: json edition
title: Mondo JSON edition
- description: The main ontology plus axioms connecting to select external ontologies,
excluding the external ontologies themselves
format: owl
id: mondo/mondo-base.owl
ontology_purl: http://purl.obolibrary.org/obo/mondo/mondo-base.owl
title: Mondo Base Module
title: Mondo Base Release
- description: The main ontology classes and their hierarchies, without references
to external terms.
format: owl
id: mondo/mondo-simple.owl
ontology_purl: http://purl.obolibrary.org/obo/mondo/mondo-simple.owl
title: Mondo Simple Release
publications:
- id: https://www.medrxiv.org/content/10.1101/2022.04.13.22273750
title: 'Mondo: Unifying diseases for the world, by the world'
Expand All @@ -3840,7 +3844,6 @@ ontologies:
label: Metazoa
title: Mondo Disease Ontology
tracker: https://github.com/monarch-initiative/mondo/issues
twitter: MonarchInit
usages:
- description: Mondo is used by the Monarch Initiative for disease annotations.
examples:
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22 changes: 14 additions & 8 deletions registry/ontologies.jsonld
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Expand Up @@ -5351,35 +5351,42 @@
"preferredPrefix": "MONDO",
"products": [
{
"description": "Complete ontology. Uses MONDO IDs. Imports merged. The original mondo.owl without merged imports and with equivalence axioms can now be obtained from the release pages and is called mondo-with-equivalents.",
"description": "Complete ontology with merged imports.",
"format": "owl-rdf/xml",
"id": "mondo.owl",
"is_canonical": true,
"ontology_purl": "http://purl.obolibrary.org/obo/mondo.owl",
"title": "Main OWL edition"
"title": "Mondo OWL edition"
},
{
"derived_from": "mondo.owl",
"description": "As OWL. xrefs can be used as proxy for equivalence. Uses Mondo IDs.",
"description": "OBO serialization of mondo.owl.",
"format": "obo",
"id": "mondo.obo",
"ontology_purl": "http://purl.obolibrary.org/obo/mondo.obo",
"title": "obo-format edition"
"title": "Mondo OBO Format edition"
},
{
"derived_from": "mondo.owl",
"description": "Equivalent to the OWL edition.",
"description": "Obographs serialization of mondo.owl.",
"format": "obo",
"id": "mondo.json",
"ontology_purl": "http://purl.obolibrary.org/obo/mondo.json",
"title": "json edition"
"title": "Mondo JSON edition"
},
{
"description": "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves",
"format": "owl",
"id": "mondo/mondo-base.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/mondo/mondo-base.owl",
"title": "Mondo Base Module"
"title": "Mondo Base Release"
},
{
"description": "The main ontology classes and their hierarchies, without references to external terms.",
"format": "owl",
"id": "mondo/mondo-simple.owl",
"ontology_purl": "http://purl.obolibrary.org/obo/mondo/mondo-simple.owl",
"title": "Mondo Simple Release"
}
],
"publications": [
Expand All @@ -5398,7 +5405,6 @@
},
"title": "Mondo Disease Ontology",
"tracker": "https://github.com/monarch-initiative/mondo/issues",
"twitter": "MonarchInit",
"usages": [
{
"description": "Mondo is used by the Monarch Initiative for disease annotations.",
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