Merge branch 'master' into anitacaron/issue2651

OBOFoundry · Dec 2, 2024 · 2f53c5f · 2f53c5f
2 parents dd1a3be + ca71495
commit 2f53c5f
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diff --git a/_config.yml b/_config.yml
@@ -3803,32 +3803,36 @@ ontologies:
   ontology_purl: http://purl.obolibrary.org/obo/mondo.owl
   preferredPrefix: MONDO
   products:
-  - description: Complete ontology. Uses MONDO IDs. Imports merged. The original mondo.owl
-      without merged imports and with equivalence axioms can now be obtained from
-      the release pages and is called mondo-with-equivalents.
+  - description: Complete ontology with merged imports.
     format: owl-rdf/xml
     id: mondo.owl
     is_canonical: true
     ontology_purl: http://purl.obolibrary.org/obo/mondo.owl
-    title: Main OWL edition
+    title: Mondo OWL edition
   - derived_from: mondo.owl
-    description: As OWL. xrefs can be used as proxy for equivalence. Uses Mondo IDs.
+    description: OBO serialization of mondo.owl.
     format: obo
     id: mondo.obo
     ontology_purl: http://purl.obolibrary.org/obo/mondo.obo
-    title: obo-format edition
+    title: Mondo OBO Format edition
   - derived_from: mondo.owl
-    description: Equivalent to the OWL edition.
+    description: Obographs serialization of mondo.owl.
     format: obo
     id: mondo.json
     ontology_purl: http://purl.obolibrary.org/obo/mondo.json
-    title: json edition
+    title: Mondo JSON edition
   - description: The main ontology plus axioms connecting to select external ontologies,
       excluding the external ontologies themselves
     format: owl
     id: mondo/mondo-base.owl
     ontology_purl: http://purl.obolibrary.org/obo/mondo/mondo-base.owl
-    title: Mondo Base Module
+    title: Mondo Base Release
+  - description: The main ontology classes and their hierarchies, without references
+      to external terms.
+    format: owl
+    id: mondo/mondo-simple.owl
+    ontology_purl: http://purl.obolibrary.org/obo/mondo/mondo-simple.owl
+    title: Mondo Simple Release
   publications:
   - id: https://www.medrxiv.org/content/10.1101/2022.04.13.22273750
     title: 'Mondo: Unifying diseases for the world, by the world'
@@ -3840,7 +3844,6 @@ ontologies:
     label: Metazoa
   title: Mondo Disease Ontology
   tracker: https://github.com/monarch-initiative/mondo/issues
-  twitter: MonarchInit
   usages:
   - description: Mondo is used by the Monarch Initiative for disease annotations.
     examples:

diff --git a/ontology/mondo.md b/ontology/mondo.md
@@ -24,24 +24,28 @@ mailing_list: https://groups.google.com/group/mondo-users
 preferredPrefix: MONDO
 products:
 - id: mondo.owl
-  title: Main OWL edition
-  description: Complete ontology. Uses MONDO IDs. Imports merged. The original mondo.owl without merged imports and with equivalence axioms can now be obtained from the release pages and is called mondo-with-equivalents.
+  title: Mondo OWL edition
+  description: Complete ontology with merged imports.
   format: owl-rdf/xml
   is_canonical: true
 - id: mondo.obo
-  title: obo-format edition
+  title: Mondo OBO Format edition
   derived_from: mondo.owl
-  description: As OWL. xrefs can be used as proxy for equivalence. Uses Mondo IDs.
+  description: OBO serialization of mondo.owl.
   format: obo
 - id: mondo.json
-  title: json edition
+  title: Mondo JSON edition
   derived_from: mondo.owl
-  description: Equivalent to the OWL edition.
+  description: Obographs serialization of mondo.owl.
   format: obo
 - id: mondo/mondo-base.owl
-  title: Mondo Base Module
+  title: Mondo Base Release
   description: The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves
   format: owl
+- id: mondo/mondo-simple.owl
+  title: Mondo Simple Release
+  description: The main ontology classes and their hierarchies, without references to external terms.
+  format: owl
 publications:
 - id: https://www.medrxiv.org/content/10.1101/2022.04.13.22273750
   title: 'Mondo: Unifying diseases for the world, by the world'
@@ -52,7 +56,6 @@ taxon:
   id: NCBITaxon:33208
   label: Metazoa
 tracker: https://github.com/monarch-initiative/mondo/issues
-twitter: MonarchInit
 usages:
 - description: Mondo is used by the Monarch Initiative for disease annotations.
   examples:

diff --git a/registry/ontologies.jsonld b/registry/ontologies.jsonld
@@ -5351,35 +5351,42 @@
             "preferredPrefix": "MONDO",
             "products": [
                 {
-                    "description": "Complete ontology. Uses MONDO IDs. Imports merged. The original mondo.owl without merged imports and with equivalence axioms can now be obtained from the release pages and is called mondo-with-equivalents.",
+                    "description": "Complete ontology with merged imports.",
                     "format": "owl-rdf/xml",
                     "id": "mondo.owl",
                     "is_canonical": true,
                     "ontology_purl": "http://purl.obolibrary.org/obo/mondo.owl",
-                    "title": "Main OWL edition"
+                    "title": "Mondo OWL edition"
                 },
                 {
                     "derived_from": "mondo.owl",
-                    "description": "As OWL. xrefs can be used as proxy for equivalence. Uses Mondo IDs.",
+                    "description": "OBO serialization of mondo.owl.",
                     "format": "obo",
                     "id": "mondo.obo",
                     "ontology_purl": "http://purl.obolibrary.org/obo/mondo.obo",
-                    "title": "obo-format edition"
+                    "title": "Mondo OBO Format edition"
                 },
                 {
                     "derived_from": "mondo.owl",
-                    "description": "Equivalent to the OWL edition.",
+                    "description": "Obographs serialization of mondo.owl.",
                     "format": "obo",
                     "id": "mondo.json",
                     "ontology_purl": "http://purl.obolibrary.org/obo/mondo.json",
-                    "title": "json edition"
+                    "title": "Mondo JSON edition"
                 },
                 {
                     "description": "The main ontology plus axioms connecting to select external ontologies, excluding the external ontologies themselves",
                     "format": "owl",
                     "id": "mondo/mondo-base.owl",
                     "ontology_purl": "http://purl.obolibrary.org/obo/mondo/mondo-base.owl",
-                    "title": "Mondo Base Module"
+                    "title": "Mondo Base Release"
+                },
+                {
+                    "description": "The main ontology classes and their hierarchies, without references to external terms.",
+                    "format": "owl",
+                    "id": "mondo/mondo-simple.owl",
+                    "ontology_purl": "http://purl.obolibrary.org/obo/mondo/mondo-simple.owl",
+                    "title": "Mondo Simple Release"
                 }
             ],
             "publications": [
@@ -5398,7 +5405,6 @@
             },
             "title": "Mondo Disease Ontology",
             "tracker": "https://github.com/monarch-initiative/mondo/issues",
-            "twitter": "MonarchInit",
             "usages": [
                 {
                     "description": "Mondo is used by the Monarch Initiative for disease annotations.",