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Caching integration #72

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Caching integration #72

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This PR merges the current caching draft into master. Changes include:

  • model storage and caches attached to pools/drones,
  • ...

tfesenbecker and others added 30 commits October 31, 2019 16:54
@tfesenbecker
added storage object to represent caches and associated readout funct…
9215d64 
…ionality
@tfesenbecker
extended CLI to support storage files
0a46da7
@tfesenbecker
extended simulator to support storage files
e727b69
@tfesenbecker
added new drone attribute sitename connecting drones and storage elem…
d64954d 
…ents
@tfesenbecker
added file provider object connecting storage objects and jobs
5597434
@tfesenbecker
added different caching/cache cleaning/walltime recalculation algorithms
bb1dcbe
@tfesenbecker
renamed storage readout
8d6db96
@tfesenbecker
fixed debug output
fb150db
@tfesenbecker
renamed storage input reader
69072ae
@tfesenbecker
updated Job class
53ebec5
@tfesenbecker
replaced function modifying walltime by function with property decorator
f997223
@tfesenbecker
Revert "replaced function modifying walltime by function with propert…
2e2c06f 
…y decorator"

This reverts commit f997223.
@tfesenbecker
replaced function modifying walltime by function with property decorator
110b3e9
@tfesenbecker
resolving PEP8 issues
b032a0d
@tfesenbecker
Merge branch 'master' of https://github.com/MatterMiners/lapis into c…
7753d0d 
…achingextension
@tfesenbecker
fixed file provider bug (wrong inputfiles dictionary)
5123034
@tfesenbecker @eileen-kuehn
Update lapis/cli/simulate.py
1c2fe9f 
Co-Authored-By: Eileen Kuehn <[email protected]>
@tfesenbecker
renamed function get_used_storage to _calculate_used_storage
8739ce9
@tfesenbecker
Merge branch 'cachingextension' of https://github.com/tfesenbecker/lapis
0b5a922 
 into cachingextension
@tfesenbecker
attached fileprovider to drone instead of job and passed it via make_…
855242a 
…drone instead of scheduler
@tfesenbecker
reworked file coverage function to return a score
bfadacb
@tfesenbecker
added proper __repr__ function
3f30c58
@tfesenbecker
added file classes
2b214aa
@tfesenbecker
moved caching algorithm and associated cache cleanup to it's own class
2bd91d7
@tfesenbecker
Redesign of the storage class and associated changes
29576eb
@tfesenbecker
put walltime getter and walltime recalculation back in seperate methods
146fbe3
@tfesenbecker
added parallel treatment of jobs input files in file provider
7ef8dd9
@tfesenbecker
fixed failed unit test that were caused by Drone without file provide…
b94ab82 
…r, one unit test fails because job has no drone, ticket already exists
@tfesenbecker
Merge branch 'master' of https://github.com/MatterMiners/lapis into c…
1e9e795 
…achingextension
@tfesenbecker
changed scoring to take filesizes into consideration
191df2b
eileen-kuehn and others added 27 commits November 29, 2019 12:15
@eileen-kuehn
added docstrings to storage interface
c7af203
@eileen-kuehn
extended tests
0019583
@eileen-kuehn
removed public update method from storage and made update private
01efb93
@tfesenbecker
added unit conversion for storageelement connection and remote connec…
a7177f7 
…tion throughput_limit, filesize, usedsize
@tfesenbecker
reformated debug output
d684dc8
@tfesenbecker
added debug output and fixed wrong function call
328e6dc
@tfesenbecker
added debug output and fixed wrong function call
0e49c32
@tfesenbecker
Merge branch 'feature/caching' of https://github.com/MatterMiners/lapis…
98dbba1 
… into feature/caching
@tfesenbecker
Merge branch 'master' of https://github.com/MatterMiners/lapis into f…
93589ba 
…eature/caching
@tfesenbecker
reduced debug output, added default value for job_repr
2351f51
@tfesenbecker
Added unittests to test functionality of Connection class with Hitrat…
9e3a446 
…eStorage storage elements
@tfesenbecker
extended type hints
5cdcf35
@tfesenbecker
fixed error in _usedstorage calculation
2747bce
@tfesenbecker
storage.py now catches exception caused by not specified storage cont…
4f6132f 
…ent config
@tfesenbecker
fixed test_storage unit tests
fa0e98f
@tfesenbecker
added new unit tests for hitrate based caching
d01ba77
@tfesenbecker
removed forgotten debug output
5477344
@tfesenbecker
storage_content_reader() handles empty files correctly now
2dc77ff
@tfesenbecker
fixed line length
c573ac5
@tfesenbecker
fixed line length
f6fec85
@maxfischer2781
Monitor.run now properly closes the sampling aiter
2fb8afe
@maxfischer2781
made the linter happy
a5d13de
@tfesenbecker
added default value for calculation_efficiency
d277354
@tfesenbecker
remove calculation_efficiency default value
a165249
@tfesenbecker
corrected wrong attribute names
691d523
@tfesenbecker
fixed usage of transfer() interface and debug outputs
b8ae864
@tfesenbecker
fixed debug output leading to failing unit test
73d6352
@tfesenbecker tfesenbecker marked this pull request as ready for review December 3, 2019 19:38
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@maxfischer2781 @pep8speaks @tfesenbecker @eileen-kuehn